Hello, I see the vignette for absolute copy number analysis, where you compare to a HapMap sample pool, but I'm not sure how to do a control / treatment analysis. I have 1 Affymetrix SNP6 .CEL of a cancer sample and 1 of a normal sample. The documentation is brief or non-existent for most of the functions that appear in the total copy number vignette. Can anyone share a workflow for a relative analysis ?
-------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
