I see the vignette for absolute copy number analysis, where you compare to a 
HapMap sample pool, but I'm not sure how to do a control / treatment analysis. 
I have 1 Affymetrix SNP6 .CEL of a cancer sample and 1 of a normal sample. The 
documentation is brief or non-existent for most of the functions that appear in 
the total copy number vignette. Can anyone share a workflow for a relative 
analysis ?

Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010

When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.

You received this message because you are subscribed to the Google Groups 
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/

Reply via email to