Hi Dario, Pierre Neuvial has kindly provided a more up-to-date vignette for doing paired total copy number analysis. You find it at:
http://aroma-project.org/vignettes/pairedTotalCopyNumberAnalysis See if that helps /Henrik On Wed, Sep 22, 2010 at 5:05 PM, Dario Strbenac <d.strbe...@garvan.org.au> wrote: > Hello, > > I see the vignette for absolute copy number analysis, where you compare to a > HapMap sample pool, but I'm not sure how to do a control / treatment > analysis. I have 1 Affymetrix SNP6 .CEL of a cancer sample and 1 of a normal > sample. The documentation is brief or non-existent for most of the functions > that appear in the total copy number vignette. Can anyone share a workflow > for a relative analysis ? > > -------------------------------------- > Dario Strbenac > Research Assistant > Cancer Epigenetics > Garvan Institute of Medical Research > Darlinghurst NSW 2010 > Australia > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
