Hi James, before anything else, what does
print(sessionInfo()) report? /Henrik On Wed, Apr 6, 2011 at 9:41 PM, James <bai.ja...@gmail.com> wrote: > Hi I am attempting to use gcRMA on HuEx-1_0-st-v2 CEL files. > > I have the correct data structure, files (CDF, Probeset etc). > > Using a workflow similar to this; > > http://www.aroma-project.org/node/38 > > I am able to run RMA fine. However, substitituting for the gcRMA > function found here, > > http://www.aroma-project.org/replication/gcRMA > > Causes the following error: > > > The following object(s) are masked from 'package:matrixStats': > > anyMissing, rowMedians > > Error in if (from == to) rep.int(from, length.out) else > as.vector(c(from, : > missing value where TRUE/FALSE needed > 20110407 14:18:14| Array #1 of 12...done > 20110407 14:18:14| Adjusting 12 arrays...done > 20110407 14:18:14|Background correcting data set...done > > Any ideas, suggestions on how to fix this would be greatly > appreciated. > > Cheers, > James > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
