Hi I am attempting to use gcRMA on HuEx-1_0-st-v2 CEL files. I have the correct data structure, files (CDF, Probeset etc).
Using a workflow similar to this; http://www.aroma-project.org/node/38 I am able to run RMA fine. However, substitituting for the gcRMA function found here, http://www.aroma-project.org/replication/gcRMA Causes the following error: The following object(s) are masked from 'package:matrixStats': anyMissing, rowMedians Error in if (from == to) rep.int(from, length.out) else as.vector(c(from, : missing value where TRUE/FALSE needed 20110407 14:18:14| Array #1 of 12...done 20110407 14:18:14| Adjusting 12 arrays...done 20110407 14:18:14|Background correcting data set...done Any ideas, suggestions on how to fix this would be greatly appreciated. Cheers, James -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
