Hello; I'm quite new to analysis of the CNV/SNP chips and totally new to AROMA, so I apologize if this is an obvious question, but I'm attempting to use AROMA to step through the CRLMM genotyping vignette on some 6.0 chips we have and am encountering the following error after the SNPRMA normalization:
Error in list(`CrlmmModel(ces, tags = "*,oligo")` = <environment>, `throw("Cannot fit CRLMM model: Chip type to be supported: ", chipType)` = <environment>, : [2011-04-22 13:12:55] Exception: Cannot fit CRLMM model: Chip type to be supported: GenomeWideSNP_6 Are the 6.0s not supported for this in Affy? Do I need to use oligo to do this? Is this unnecessary and all this information would come out of a CRMA/ACNE analysis (we would like to get copy number as well for our analysis)? I searched the group archives but most of the posts were from 2008 regarding not supporting CRLMM and since there was a vignette (albeit for 100k/500k) I wasn't sure if that was still the case. Thanks... Hollis -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/