Yes, I am using CBS model, so the method will be DNAcopy right? I don't think I could use GLAD, since I'm using windows 64bits machine.
yan -----Original Message----- From: aroma-affymetrix@googlegroups.com [mailto:aroma-affymetrix@googlegroups.com] On Behalf Of Henrik Bengtsson Sent: 25 May 2011 21:22 To: aroma-affymetrix@googlegroups.com Subject: Re: [aroma.affymetrix] copy number gain /loss Hi, you don't say which method you are using, but I guess you are using CBS (CbsModel). If you use GLAD (GladModel), it will also call segments for you. /Henrik On Wed, May 25, 2011 at 8:21 AM, Yan Jiao <y.j...@ucl.ac.uk> wrote: > Hi > > > > Does the AROMA package allow copy-number calling? > > The output I got is just mean and count, is there a way to get copy number > gain/loss information? > > > > Many thanks > > > > Yan > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
