Dear, Let me describe from beginning, I was facing the problem of wrong cell indeces using 'getCellIndices' command (with an older version of aroma.affymetrix) but i was able to retrieve the indeces. After some search, i found that new version of aroma.affymetrix 2.1.0 perhaps 2.0.6 has resolved this problem. So i have updated the aroma.affymetrix version. Now i can' not even retrieve the index of Units using "indexof" commnand the error message is :
no applicable method for 'indexOf' applied to an object of class "character" Probably that correspond to the CDF file: I am using 3 CDFs: For 1) Gene 2) Transcript 3) exons I tried "indexof" command with gene CDF and its working because (probably) Units are in numeric format, However, failed with concern of transcript and Exon CDFs probably 'alpha numeric' format of Units. any possible suggestion? regards, Ravi -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
