Bizarrely now it's working. Or maybe not so bizarrely. It turned out
there was an antique version of blastall in a part of the path that took
precedence over version 2.2.4.
I still have that ACT question, though. Do I need to set a flag
somewhere to tell it to expect a blastall -m 8 tab-delimited table
instead of space-delimited MSP Crunch output?
Thanks for bearing with me!
anja
--
Angela M. Baldo, PHD
Microbial Food Safety
ERRC, NAA
ARS, USDA
600 East Mermaid Lane
Wyndmoor, PA 19038-8598
[EMAIL PROTECTED]
voice: (215) 233-6587
fax: (215) 233-6581
- [artemis-users] Invoking Blastall Angela M. Baldo
- [artemis-users] passing blastall output to ACT Angela M. Baldo
- [artemis-users] p.s. (using only blastn) Angela M. Baldo
- Re: [artemis-users] never mind about how to invok... Angela M. Baldo
- Re: [artemis-users] never mind about how to i... Kim Rutherford
- [artemis-users] options and run scripts for A... Angela M. Baldo
- Re: [artemis-users] options and run scrip... Kim Rutherford
- [artemis-users] Row width in "v... Angela M. Baldo
- Re: [artemis-users] Row width in... Kim Rutherford
- [artemis-users] Re: Row widt... Angela Baldo
- Re: [artemis-users] Re: Row ... Kim Rutherford
