On Tue, 05 Nov 2002 09:07:20 -0500, Angela M Baldo wrote: > I still have that ACT question, though. Do I need to set a flag > somewhere to tell it to expect a blastall -m 8 tab-delimited table > instead of space-delimited MSP Crunch output?
This format is only supported by the development version of ACT. It should work out which format the input file is in automatically. The development version of ACT is available for UNIX: ftp://ftp.sanger.ac.uk/pub/pathogens/software/act/builds/act_compiled_latest.tar.gz and for Windows: ftp://ftp.sanger.ac.uk/pub/pathogens/software/act/builds/act_compiled_latest.jar Note that the order of the command line arguments has changed since version 1 to allow for more than two genomes to be compared. The order is now: act sequence1 comparison_file sequence2 More examples are here: http://www.sanger.ac.uk/Software/ACT/current_manual/runningunix.html Kim.
