Hi Milo
It looks like you need an extra space in between FT and the repeat_region
qualifier. Let me know if this doesn't solve the problem.
Regards
Tim
Tim Carver
The Wellcome Trust Sanger Institute
Wellcome Trust Genome Campus, Hinxton,
Cambridge, CB10 1SA, UK
On 6/7/05 5:33 pm, "Milo Thurston" <[EMAIL PROTECTED]> wrote:
> Hello,
> I've written a perl script that produces feature tables, and for
> some reason artemis won't read them. The tables contain entries
> like this:
>
> FT repeat_region 149128..149141
> FT /label={t}13
> FT /note="(t)13"
> FT repeat_region 15162..15190
> FT /label={tt-tt}14
> FT /note="(tt-tt)14"
> FT repeat_region 35971..35997
> FT /label={tt-aa}13
> FT /note="(tt-aa)13"
>
> The typical errors are as follows:
>
> failed to open <file>: sequence file contains a character that is not a letter
>
> I'm starting artemis (v. 7) with:
>
> ./art genbank_file +feature_table
>
> Strangely, I've used similar code in other perl scripts without problems.
> Can anyone suggest a cause and/or a cure?
> Thanks,
> Milo Thurston.
>
> --
> Dr. Milo Thurston, CEH Oxford, Mansfield Road, Oxford, OX1 3SR.
> 'phone 01865 281658, fax 01865 281696.
> http://www.genomics.ceh.ac.uk/lab/
>
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