+----[ Marcos Mancilla <[EMAIL PROTECTED]> (13.Jul.2005 17:29): | | Hi, | | I am first time ACT user and I am looking for answer for trivial questions, | but I could not find them in the mailing list archives. I performed | comparisons between Brucella genomes and they have been already successfully | completed!!!. But, I have a doubt about the comparisons with B. melitensis | 16M files. When I performed the comparison between B. melitensis files (EMBL | or GenBank) vs B. suis or B. abortus files, it is displayed B. melitensis | genome "flipped" respect B. suis or B. abortus
Hola Marcos, yes, the B. melitensis genome is 'flipped' with respect to the other two, as there is a big rearrangement near the ori. [snipped] | I do not know if the screen (almost all blue between genomes and a double | triangle like an genomic inversion) displayed can be change by flipping the | B. melitensis sequence before running the comparison (if you know, please | let me know!!). Is it possible to perform a comparison changing the genome | orientation of B. melitensis? What we have done is to use a flipped B. melitensis genome for the comparisons. Saludos, Fernan | Thanks, | | Marcos Mancilla | Ph.D. student | +----] _______________________________________________ Artemis-users mailing list [email protected] http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
