Perhaps there's a difference in rsync arguments? In particular,
"--hard-links" ?
BPCv4 default arguments:
$Conf{RsyncArgs} = [
'--super',
'--recursive',
'--protect-args',
'--numeric-ids',
'--perms',
'--owner',
'--group',
'-D',
'--times',
'--links',
'--hard-links',
'--delete',
'--delete-excluded',
'--one-file-system',
'--partial',
'--log-format=log: %o %i %B %8U,%8G %9l %f%L',
'--stats',
#
# Add additional arguments here, for example --acls or --xattrs
# if all the clients support them.
#
#'--acls',
#'--xattrs',
];
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