Hi Bob, this may not be the optimal way of solving this problem, but why don't you create a reporterlist for the genes that are A times overexpressed in x. Then do a filtering on hyb y to find the genes that are B times underexpressed. If I understand your project right, it should be possible to then do a filtering on y: "reporter list present in <name of reportelist from x>" to find the reporters present in both conditions.
Heidi M. Namløs > Hi again, > > Now that the festive season is well and truly over, I wonder if > anyone can help me out with my question (see below). > > many thanks! > Bob. > > Bob MacCallum writes: > > > > Hi all, > > > > I've been looking at the demo of BASE 1.2 at Lund and I can't figure > out one > > thing - but perhaps I'm being stupid and have missed something. > > > > > > Let's say I have hybridisation X (condition X vs. control) and > > hybridisation Y (condition Y vs. control). > > > > How would I set up a filter which would "give me all the > genes/reporters that > > are at least A times overexpressed in hyb. X AND at least B times > > underexpressed in hyb. Y"? > > > > The filters don't seem to apply an AND across multiple data sets. > Also, I > > don't see how you combine biological and technical replicates into one > data > > set. > > > > Do people normally do this type of analysis with plugins or external > software? > > > > many thanks, > > Bob. > > > > -- > > Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | > > Division of Cell and Molecular Biology | Imperial College London | > > Phone +442075941945 | Email [EMAIL PROTECTED] > > > > > > ------------------------------------------------------- > > This SF.net email is sponsored by: Splunk Inc. Do you grep through log > files > > for problems? Stop! Download the new AJAX search engine that makes > > searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! > > http://ads.osdn.com/?ad_id=7637&alloc_id=16865&op=click > > _______________________________________________ > > The BASE general discussion mailing list > > basedb-users@lists.sourceforge.net > > unsubscribe: send a mail with subject "unsubscribe" to > > [EMAIL PROTECTED] > > -- > Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | > Division of Cell and Molecular Biology | Imperial College London | > Phone +442075941945 | Email [EMAIL PROTECTED] > > > ------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. Do you grep through log > files > for problems? Stop! Download the new AJAX search engine that makes > searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! > http://ads.osdn.com/?ad_id=7637&alloc_id=16865&op=click > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] > ------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://ads.osdn.com/?ad_id=7637&alloc_id=16865&op=click _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
