Wow, thanks for pointing me to your project. Looks like a lot of what's there would be useful to our testing. From what I've navigated, though, it looks like the only way to export the data for entry into our BASE2 system would be to manually go to each page and get the well values, then copy/paste into a spreadsheet. Alternately, being the programmer-type folk that I am, a screen scraper could be written to pound your web server into submission for an hour or two. Is there any way of obtaining a database export of the project directly without going through the web interface?
Many thanks again!!
Tyler
On 8/14/06, Jason <[EMAIL PROTECTED]> wrote:
My institution a lot of data that I'm legally OBLIGATED TO SHARE, as
it's part of our research grants to provide open access to our data.
The font end for this data is ChemBank: http://chembank.broad.harvard.edu
Currently there is plate reader data is available, however we are
looking to eventually integrate our genepix and affy data into this
interface. The rawest of data currently publicly accessible would look
something like this (choose "View well values."):
http://chembank.broad.harvard.edu/assays/view-plate.htm?id=1002381
If this is the type of data you could use, let me know and we can work
out a way to get you the entire blocks of data.
If you need genepix or affy, I likely will be able to provide that also
in time, but in limited amounts as there currently isn't an established
system to share this (I will be working on that come September).
We also have another dataset for collaborators that we share under the
ICGs data sharing agreement :
http://www.broad.harvard.edu/chembio/platform/Forma/BCBDataSharingAgreement.pdf
Good luck in your development.
Regards,
Jason
Tyler Young wrote:
> I'm not sure if this question should go to the user list or the
> developers, but I'll try it out here first.
>
> My name is Tyler Young, and I work for a company that is looking to
> branch into providing storage facilities for microarray data. After
> some extensive research, we've settled on BASE2 as our back-end of
> choice. Before we make a final decision about whether to go to
> production with this, we need to do some extensive performance testing
> to make sure our hardware is up to the task.
>
> The problem we're having is that since we're not a research lab, we
> don't actually have a real data set to work with and perform simulated
> queries on. Is there a public dataset out there for BASE2 that we
> could load into our system for testing? Barring that, is there
> anybody out there that would be willing (and legally able) to share a
> data set with us?
>
>
> Many thanks in advance!
>
> Tyler Young
> ------------------------------------------------------------------------
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--
Jason Fuller
Chemical Biology Program
Broad Institute of MIT and Harvard
7 Cambridge Center
Room 3100F
Cambridge, MA 02142
617-324-4467
http://www.broad.mit.edu
http://www.broad.harvard.edu/chembio/
-------------------------------------------------------------------------
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
_______________________________________________
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unsubscribe: send a mail with subject "unsubscribe" to
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