On Monday 05 February 2007 13:30, Nicklas Nordborg wrote: > Emil Lundberg wrote: > > Hi all, > > > > Our site will likely wish to store Illumina array data in BASE 2 in the > > near future. Sifting through the mailing list archive, this seems indeed > > possible (based on the post below, from july '06). > > > > My question is has anyone implemented this already (Reha Y.?) and is > > willing to share the specifications and/or will this find its way into > > BASE 2 proper some day? > > If somebody is willing to implement it. Right now we have to focus on > other things. We can put it into the standard BASE distribution if someone: > > * comes up with a <raw-data-type> definition for the Illumina Chip > * provides one or more plugin configurations for importing the data files > > For an example of the existing plugin configurations see: > http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/coreplugi >ns.html
One of the issues with Illumina data is that several hybridizations happen on one array, all in the same "channel". Furthermore, the output files from image analysis are no longer one-hyb/one-file. There are multiple hybs represented in one file. This will make constructing a plugin difficult, I would think, but I could be wrong. Sean ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier. Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
