Nicklas Nordborg wrote: > Jeremy Davis-Turak wrote: >> I have implemented the incorporation of Illumina data into our BASE >> system, along with a raw data importer. Our version requires that the >> gene_profile.csv be split up into separate files, which we have done >> with an R script. This can also be done manually in excel, or feasibly >> in a BASE script. >> >> Nicklas, how do I share the plugin configurations with others? > > I have created a ticket in our trac system for this issue: > http://base.thep.lu.se/ticket/486 > > Everyone are welcome to comment and it is also possible to attach files > to it. Note that you have to be logged in before you can comment or > upload files. Use base/base as username/password. > > I think the best solution would be to have a BASE plugin that can split > the file automatically and the import the raw data in one go. If that is > possible or not I don't know since I have no knowledge of the file format.
We have planned to include the Illumina import plug-in in the next release (2.4). We have not been able to find any good description of the file format or example data files. Does anybody out there have any information to help us implement this? We definitely need one or more example data files that we can use for testing. The files will be put in a protected repository that is only available to the core developers. It would also be nice to have a more formal description, or at least a short overview, of the file format. Since it is only 3 weeks to go before 2.4 is released we need any information as soon as possible (this week!). /Nicklas ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
