hmm.. i had restored back to 2.1.2, then upgraded to 2.2.1 and it was working ok until i took ownership of some jobs as root.. then went to the trash can. it gave me this error:
Object with id: 2 was not of the specified subclass: net.sf.basedb.core.data.BioMaterialData (Discriminator: 1746955520) and now most of the queries bomb out.. biosources, samples, scans, hybs, etc.. the tomcat log looks like this: 16:00:59,475 ERROR [jsp]:704 - Servlet.service() for servlet jsp threw exceptionjava.lang.NullPointerException at org.apache.jsp.admin.plugindefinitions.edit_005fplugin_jsp.appendPermissionLetter(edit_005fplugin_jsp.java:65) at org.apache.jsp.admin.plugindefinitions.edit_005fplugin_jsp._jspService(edit_005fplugin_jsp.java:1163) at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:97) then 16:03:12,363 ERROR [jsp]:253 - Servlet.service() for servlet jsp threw exceptionorg.hibernate.exception.DataException: could not read next row of results at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:77) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.loader.Loader.loadSingleRow(Loader.java:268) at org.hibernate.impl.ScrollableResultsImpl.prepareCurrentRow(ScrollableResultsImpl.java:231) at org.hibernate.impl.ScrollableResultsImpl.next(ScrollableResultsImpl.java:100) at net.sf.basedb.core.ScrollIterator.hasNext(ScrollIterator.java:67) at net.sf.basedb.core.ItemResultIterator.hasNext(ItemResultIterator.java:106) ... Caused by: com.mysql.jdbc.exceptions.MySQLDataException: '1340029796353' in column '15' is outside valid range for the datatype INTEGER. at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:893) at com.mysql.jdbc.ResultSet.throwRangeException(ResultSet.java:7391) i'll try to reinstall and reproduce the error. Restarting tomcat did not change anything, i think the db is probably corrupted. -keith Jari Häkkinen wrote: > Hi all, > > We are eager to announce the release of BASE 2.2.1. You can download > BASE from http://base.thep.lu.se/wiki/DownloadPage > > This release does not contain the database upgrade that was not working > in 2.2. We have also added a check making it impossible to make a > "backwardsupgrade", i.e., reverting to an earlier version using the > update script. This is of course only available from now on so be > careful with the older releases. > > Of course, all the nice things that was added to 2.2 is still there. A > list of fixed and added features in 2.2 is found by clicking on this > beast: > http://base.thep.lu.se/query?status=new&status=assigned&status=reopened&status=closed&milestone=BASE+2.2&order=id > > > Enjoy, > > The Lund BASE Team > -- Keith Ching, Ph.D. Bioinformatics, Laboratory of Gene Regulation Ludwig Institute for Cancer Research 9500 Gilman Drive, #0653 CMM East, Room 3020 La Jolla, CA 92093-0653 [EMAIL PROTECTED] 858-822-5767 ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier. Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]