uh oh.. all of the 2.2.1 backups are giving me problems..
i guess i'll try to go back to 2.1.2 and re-upgrade..

-keith

Keith Ching wrote:
> hmm..  i had restored back to 2.1.2, then upgraded to 2.2.1 and it
> was working ok until i took ownership of some jobs as root.. then went
> to the trash can. it gave me this error:
>
> Object with id: 2 was not of the specified subclass: 
> net.sf.basedb.core.data.BioMaterialData (Discriminator: 1746955520)
>
> and now most of the queries bomb out.. biosources, samples, scans, hybs, 
> etc..
>
> the tomcat log looks like this:
>
> 16:00:59,475 ERROR [jsp]:704 - Servlet.service() for servlet jsp threw 
> exceptionjava.lang.NullPointerException        at 
> org.apache.jsp.admin.plugindefinitions.edit_005fplugin_jsp.appendPermissionLetter(edit_005fplugin_jsp.java:65)
>         
> at 
> org.apache.jsp.admin.plugindefinitions.edit_005fplugin_jsp._jspService(edit_005fplugin_jsp.java:1163)
>         
> at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:97)
>
> then
>
> 16:03:12,363 ERROR [jsp]:253 - Servlet.service() for servlet jsp threw 
> exceptionorg.hibernate.exception.DataException: could not read next row 
> of results        at 
> org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:77)  
>       
> at 
> org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
>         
> at org.hibernate.loader.Loader.loadSingleRow(Loader.java:268)        at 
> org.hibernate.impl.ScrollableResultsImpl.prepareCurrentRow(ScrollableResultsImpl.java:231)
>         
> at 
> org.hibernate.impl.ScrollableResultsImpl.next(ScrollableResultsImpl.java:100) 
>        
> at 
> net.sf.basedb.core.ScrollIterator.hasNext(ScrollIterator.java:67)        
> at 
> net.sf.basedb.core.ItemResultIterator.hasNext(ItemResultIterator.java:106)
>
> ...
>
> Caused by: com.mysql.jdbc.exceptions.MySQLDataException: '1340029796353' 
> in column '15' is outside valid range for the datatype INTEGER.        
> at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:893)        
> at com.mysql.jdbc.ResultSet.throwRangeException(ResultSet.java:7391)
>
>
> i'll try to reinstall and reproduce the error. Restarting tomcat did not 
> change
> anything, i think the db is probably corrupted.
>
> -keith
>   


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