Hi BASErs,
I am a new Base2 user and I have a java.lang.NullPointerException when trying to import Genepix raw data in: View->Raw Bioassays..->Import My raw data importer seems to work well. I have looked for extra spaces but all looks OK.. Could somebody help me? Thank's The result is: java.lang.NullPointerException at net.sf.basedb.util.parser.ConstantMapper.<init>(ConstantMapper.java:70) at net.sf.basedb.util.parser.FlatFileParser.getMapper(FlatFileParser.java:865) at net.sf.basedb.util.parser.FlatFileParser.getMapper(FlatFileParser.java:789) at net.sf.basedb.plugins.AbstractFlatFileImporter.getMapper(AbstractFlatFileImporter.java:870) at net.sf.basedb.plugins.RawDataFlatFileImporter.beginData(RawDataFlatFileImporter.java:479) at net.sf.basedb.plugins.AbstractFlatFileImporter.doImport(AbstractFlatFileImporter.java:562) at net.sf.basedb.plugins.AbstractFlatFileImporter.run(AbstractFlatFileImporter.java:442) at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:88) at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:420) at java.lang.Thread.run(Thread.java:595) Job parameters Character setISO-8859-1 Decimal separatordot Default error handlingfail Feature mismatch File/home/jpgauthier/raw data/H1LD-Cy3.gprbase Missing a required value missingReporterError Invalid numeric value Numeric value out of range Raw bioassayrb1 String too long Plugin configuration parameters Parameter version6 (6) Block\Block\ Character setISO-8859-1 Column\Column\ Data footer Data header\QBlock Column Row Name ID X Y Dia. F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) Log Ratio (635/532) F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags Normalize Autoflag\E Data splitter\t Decimal separatordot Header(.+)=(.*) Ignore Max data columns MetaGridX MetaGridY Min data columns CV Background pixels\B Pixels\ Channel 1 background mean\B635 Mean\ Channel 1 background median\B635 Median\ Channel 1 background standard deviation\B635 SD\ Channel 1 foreground mean\F635 Mean\ Channel 1 foreground median\F635 Median\ Channel 1 foreground standard deviation\F635 SD\ Percent saturated pixels\F635 % Sat.\ Percent pixels within 1 standard deviation\% > B635+1SD\ Percent pixels within 2 standard deviations\% > B635+2SD\ Channel 2 background mean\B532 Mean\ Channel 2 background median\B532 Median\ Channel 2 background standard deviation\B532 SD\ Channel 2 foreground mean\F532 Mean\ Channel 2 foreground median\F532 Median\ Channel 2 foreground standard deviation\F532 SD\ Percent saturated pixels\F532 % Sat.\ Percent pixels within 1 standard deviation\% > B532+1SD\ Percent pixels within 2 standard deviations\% > B532+2SD\ Spot diameter\Dia.\ Foreground pixels\F Pixels\ Flags\Flags\ M value\Normalize\ Standard deviation of ratios\Ratios SD (635/532)\ Rgn R2\Rgn R2 (635/532)\ Rgn ratio\Rgn Ratio (635/532)\ Raw data typegenepix Reporter ID\ID\ Row\Row\\ Remove quotestrue X\X\ Y\Y\ Gauthier Jean-Pierre. Bio-informatique. INRA. UMR BIO3P. Domaine de la Motte. BP. 35327. 35653 LE RHEU CEDEX. tel : 33(0)2.23.48.51.68 fax : 33(0)2.23.48.51.50 mail : [EMAIL PROTECTED] ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
