Dear BASE team,

I just got the following error while creating a root bioassayset for a small
test experiment.  My hunch is that it's something bad like a corrupted db...

I plan to get 2.5 installed ASAP, but was hoping to do a demo with 2.4.5 to
my colleagues later this week. 

Well I am in luck, I just repeated exactly the same thing and it worked fine.

But the odd thing is that I now see that there are three identical-looking
bioassaysets in the experiment, even though I only ran the Formula intensity
calculator plugin twice.  From the "Date" column it is the latter analysis
which got duplicated (and the original one seems to work ok).  I am not
usually a double-clicker, but that might be one explanation.

Strange indeed.

Here's the stack trace in any case.


net.sf.basedb.core.BaseException: Table 'D13Pos' already exists
at net.sf.basedb.core.HibernateUtil.createVirtualTable(
at net.sf.basedb.core.VirtualDb.createTables(
at net.sf.basedb.core.PositionBatcher.insert(
at net.sf.basedb.core.InternalJobQueue$
Caused by: com.mysql.jdbc.exceptions.MySQLSyntaxErrorException: Table 'D13Pos' 
already exists
at com.mysql.jdbc.SQLError.createSQLException(
at com.mysql.jdbc.MysqlIO.checkErrorPacket(
at com.mysql.jdbc.MysqlIO.sendCommand(
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(
at com.mysql.jdbc.Connection.execSQL(
at com.mysql.jdbc.Statement.executeUpdate(
at com.mysql.jdbc.Statement.executeUpdate(
at net.sf.basedb.core.HibernateUtil.createVirtualTable(
... 8 more

Version         BASE 2.4.6pre (build #3938; schema #40)
Web server      Apache Tomcat/5.5.20
Database Server         MySQL 5.0.21-max-log
Database Dialect        org.hibernate.dialect.MySQLInnoDBDialect
JDBC Driver     com.mysql.jdbc.Driver (version 5.0)
Java runtime    Java(TM) SE Runtime Environment (1.6.0-b105), Sun Microsystems 
Operating system        Linux amd64
Memory  Total: 474.6 MB
Free: 238.2 MB
Max: 910.3 MB

Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups |
Division of Cell and Molecular Biology | Imperial College London |
Phone +442075941945 | Email [EMAIL PROTECTED]

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