Hi everyone, I have questions regarding on how to create a transcription binding sites profile.
Since I have the sequences of the areas that bind to the gene from Chip-ChIp , I can align all the sequences then with the alignment that created to generate a profile. Since this is high-throughput, does any one know any tool that can align short sequences programmatically and then output an alignment file? Also a program that generates an alignment profile from an alignment. Thanks, Anney _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
