I believe I have found the problem. I need to get both the UART and the 
digital I/o pins enabled at the same time in the device tree, however when 
I edit uEnv.txt to enable the UART in the usual manner, universal i/o is no 
longer enabled, I am trying to explicitly enable that as well as the UART1. 
I'll keep you all posted. Advice on this is also highly appreciated.

On Friday, June 10, 2016 at 10:42:51 AM UTC-4, [email protected] wrote:
>
> I am trying to get an arduino to communicate with the BeagleBone Black and 
> send some measured sensor data over via the serial port. I am using the 
> most recent version of node red to do this. I am running the latest version 
> of Debian.
>
> I have confirmed using an oscilloscope that the arduino's serial port is 
> outputting the information when it is supposed to (it's triggered by an 
> interrupt sent by the BBB). I can see the serial ports that are supposedly 
> enabled in /dev and they appear as ttyO1, ttyO2, and ttyO4, and I have 
> confirmed the port mapping and ruled out wiring issues as well (I'm using a 
> logic level converter to go from the arduino's 5V to the BBB's 3.3V level).
>
> The ports also appear to map like so:
>
> lrwxrwxrwx 1 root root 5 Jun  9 22:37 ttyO1 -> ttyS1
> lrwxrwxrwx 1 root root 5 Jun  9 22:37 ttyO2 -> ttyS2
> lrwxrwxrwx 1 root root 5 Jun  9 22:37 ttyO4 -> ttyS4
>
> Node red also sees these ports and indicated that they are 'connected' 
> which I assume means opened. 
>
> When I attempt to receive data on the BBB from ANY of these ports I am 
> unable to see anything on the output in node red or from the command 
> prompt. 
>
> I am using a baud rate of 300 to rule out timing issues. I have also 
> confirmed that the arduino's serial settings should be matched to what the 
> BBB is expecting. Lastly, I have even tried sending simple strings from one 
> serial port to the other on the BBB itself.
>
> Has anyone here had this sort of issue and if so, how did you come to a 
> solution?
>
>
> *TL;DR: *When I attempt to receive data on the BBB from ANY of the UART 
> ports I am unable to see anything on the output in node red or from the 
> command prompt. Already ruled out the obvious issues, and the BBB clearly 
> sees the ports. What could be the issue here?
>
> json source from nodered:
>
> [{"id":"1a47c203.f9dc9e","type":"serial-port","z":"1d18ac42.887634","serialport":"/dev/ttyO2","serialbaud":"300","databits":"8","parity":"none","stopbits":"1","newline":"\\n","bin":"false","out":"char","addchar":false},{"id":"879d3b35.230e98","type":"debug","z":"1d18ac42.887634","name":"Sensor
>  
> Output 
> View","active":true,"console":"false","complete":"true","x":385.78334045410156,"y":60.44999694824219,"wires":[]},{"id":"5eef16d7.037da8","type":"serial
>  
> in","z":"1d18ac42.887634","name":"Sensor 
> Data","serial":"1a47c203.f9dc9e","x":124.7833251953125,"y":150.683349609375,"wires":[["879d3b35.230e98"]]},{"id":"52614fb3.59fe2","type":"bbb-discrete-out","z":"1d18ac42.887634","pin":"P8_7","inverting":false,"toggle":true,"defaultState":"1","name":"Interrupt
>  
> to 
> Sensors","x":284.38330078125,"y":348.3000183105469,"wires":[["ff5b799a.86d1a"]]},{"id":"bdbd2367.9d45a","type":"inject","z":"1d18ac42.887634","name":"Poll
>  
> Sensors","topic":"","payload":"\\n 
> int","payloadType":"str","repeat":"","crontab":"","once":false,"x":126.38330078125,"y":283.7333679199219,"wires":[["52614fb3.59fe2"]]},{"id":"ff5b799a.86d1a","type":"trigger","z":"1d18ac42.887634","op1":"int","op2":"0","op1type":"val","op2type":"pay","duration":"250","extend":false,"units":"ms","reset":"","name":"Reset","x":468.08331298828125,"y":352.0333251953125,"wires":[["b8a60fb7.8d86f"]]},{"id":"b8a60fb7.8d86f","type":"bbb-discrete-out","z":"1d18ac42.887634","pin":"P8_7","inverting":false,"toggle":true,"defaultState":"1","name":"Reset
>  
> to 
> HIGH","x":611.38330078125,"y":405.96668243408203,"wires":[[]]},{"id":"7e38a1db.de0088","type":"comment","z":"1d18ac42.887634","name":"Send
>  
> Interrupt to 
> Arduino","info":"","x":385.7833251953125,"y":286.9666748046875,"wires":[]},{"id":"b75bbc4d.e19d18","type":"comment","z":"1d18ac42.887634","name":"Serial
>  
> Port 
> Setup","info":"","x":142.0833282470703,"y":79.08333587646484,"wires":[]}] 
>
>
>

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