Hi Kozo,
On Wed, Jan 16, 2013 at 1:00 PM, Kozo Nishida <knish...@riken.jp> wrote: > Hi Dan, > > Thank you for developing this KEGGREST package, this package is very helpful. > > By the way, I have developed my own KEGGREST package for the same > purpose as your KEGGREST. > https://github.com/kozo2/KEGGREST > > I would like to contribute your KEGGREST package. > Is there github's pull request-like system in bioc devel? You can fork this github repository: https://github.com/Bioconductor/KEGGREST Then send a pull request when you'd like me to review your changes. Thanks, Dan > > Thanks, > Kozo > >> Hi Bioconductors, >> >> The KEGGREST package is now available in devel (Bioconductor 2.12). >> >> http://www.bioconductor.org/packages/devel/bioc/html/KEGGREST.html >> >> KEGGREST is intended to replace the KEGGSOAP package, which is now >> deprecated. >> KEGGSOAP does not work since KEGG shut down its SOAP server at the end >> of 2012. Information about the transition from SOAP to REST is here: >> >> http://www.genome.jp/kegg/soap/ >> >> KEGGREST is designed to closely follow the KEGG REST API which is >> documented here: >> >> http://www.kegg.jp/kegg/docs/keggapi.html >> >> The REST interface is simpler and in some ways more powerful than the >> old SOAP interface. >> However, there is some functionality in the SOAP API which KEGG did >> not port to the REST API. >> >> KEGGREST is in devel, which means it is still subject to change. >> >> We welcome feedback about this package. >> >> Thanks, >> Dan > > > -- > Kozo Nishida > knish...@riken.jp > > Laboratory for Biochemical Simulation > OLABB, Osaka University 6-2-3, Furuedai, Suita, Osaka 565-0874, JAPAN > Quantitative Biology Center, RIKEN > Tel: +81-70-6800-3899 > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
