On Thu, Jul 4, 2013 at 7:00 PM, Kasper Daniel Hansen <kasperdanielhan...@gmail.com> wrote: > So this thread is good for my follow up question. > > I am setting up a Windows box to test/fix bumphunter (newest version 1.1.7) > which has been broken (R CMD check) for a while, especially on Windows. > > This page (bottom) > http://bioconductor.org/packages/2.13/bioc/html/bumphunter.html > suggests that the latest binary version for Windows is 1.1.0 which is also > probably the last time it build and checked properly. So this all reflects > my expectations of not being able to get a binary version newer than 1.1.0 > > However, when I install R-3.0.1 under windows, source biocLite and do > useDevel(TRUE) (getting BiocInstaller version 1.11.3) and then do > biocLite("bumphunter") > I get version 1.1.7. Why? I am asking for binary versions and nor source. >
The website wasn't being updated due to an unrelated issue. Fixed now. Dan > Best, > Kasper > > > On Sun, Jun 30, 2013 at 8:55 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: >> >> >> >> On Sunday, June 30, 2013, Kasper Daniel Hansen >> <kasperdanielhan...@gmail.com> wrote: >> > Doesn't this mean that the issue Wolfgang discusses only arises when >> > people install from subversion? >> >> Yes. >> >> Dan >> >> >> > Kasper >> > >> > On Sun, Jun 30, 2013 at 6:56 PM, Martin Morgan <mtmor...@fhcrc.org> >> > wrote: >> >> >> >> On 06/30/2013 03:32 PM, Dan Tenenbaum wrote: >> >>> >> >>> On Jun 30, 2013 12:43 PM, "Kasper Daniel Hansen" < >> >>> kasperdanielhan...@gmail.com> wrote: >> >>>> >> >>>> Also, as far as I understand, the package does not get build using >> >>>> the new >> >>>> commit, if it has already been build with that version number before. >> >>> >> >>> The package is built but not propagated to the web/repository. This >> >>> "feature" allows developers to check that their changes get built by >> >>> the >> >> >> >> It's more a safety measure -- if the developer FORGETS to bump, then at >> >> least we are not distributing two implementations under the same version >> >> number. >> >> >> >> As Wolfgang says, version numbers are free so no need to hold back on >> >> their use. >> >> >> >> Martin >> >> >> >>> build system, but yes, once you're satisfied that things work, you >> >>> should >> >>> bump the version number to propagate the package and avoid the >> >>> confusion >> >>> Wolfgang describes. >> >>> >> >>> Dan >> >>> >> >>> >> >>>> >> >>>> Best, >> >>>> Kasper >> >>>> >> >>>> >> >>>> On Sun, Jun 30, 2013 at 3:12 AM, Wolfgang Huber <whu...@embl.de> >> >>>> wrote: >> >>>> >> >>>>> Hi All, >> >>>>> >> >>>>> just a reminder that it is good practice to bump up the package >> >>>>> version >> >>>>> when you commit a change to a package's source, even if you consider >> >>>>> it >> >>>>> 'trivial'. Version numbers are free, while the confusion ensuing >> >>>>> from >> >>> >> >>> there >> >>>>> >> >>>>> being different versions of the software with ostensibly the same >> >>> >> >>> version >> >>>>> >> >>>>> can waste a great deal of someone's time. >> >>>>> >> >>>>> Dan / Bioc-Core team: would it be good to mention this somewhere on >> >>>>> http://bioconductor.org/developers/source-control ? >> >>>>> >> >>>>> Best wishes >> >>>>> Wolfgang >> >>>>> _______________________________________________ >> >>>>> Bioc-devel@r-project.org mailing list >> >>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >>>>> >> >>>> >> >>>> [[alternative HTML version deleted]] >> >>>> >> >>>> _______________________________________________ >> >>>> Bioc-devel@r-project.org mailing list >> >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >>> >> >>> [[alternative HTML version deleted]] >> >>> >> >>> _______________________________________________ >> >>> Bioc-devel@r-project.org mailing list >> >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >>> >> >> >> >> >> >> -- >> >> Computational Biology / Fred Hutchinson Cancer Research Center >> >> 1100 Fairview Ave. N. >> >> PO Box 19024 Seattle, WA 98109 >> >> >> >> Location: Arnold Building M1 B861 >> >> Phone: (206) 667-2793 >> > >> > > > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
