I had this issue with GWASTools/GWASdata at one point. There is only
one copy of an experiment data package, so if you change it, it will
break the current release version of bsseq. The solution I came up with
was to add new objects with different names to the data package, and
change my examples in the devel version to use the new names. You can
delete the old objects after the next release cycle.
Stephanie
On 7/10/13 7:05 AM, Kasper Daniel Hansen wrote:
I have just changed the class definition for a core class in bsseq. A
supporting experiment data package, bsseqData, contains two objects of this
core class and now it needs to be updated (specifically because the
example() contains a command which prints the object and this printing now
fails).
I can update the bsseqData package, but do I mess with earlier releases
when I do this? I am uncertain because the /data is stored in another
repository. How should I handle this?
Best,
Kasper
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