Hi Stephanie, On 07/10/2013 12:51 PM, Stephanie M. Gogarten wrote:
I had this issue with GWASTools/GWASdata at one point. There is only one copy of an experiment data package, so if you change it, it will break the current release version of bsseq.
Yes there is only one copy of an experiment data package in svn. But the package gets built twice: for BioC release and for BioC devel. Then, it gets propagated twice: to the release repos and to the devel repos. If you make a change in svn that breaks the package in release, then the modified package won't propagate to the release repos. So everything is fine. The package looks broken in release if you look at the build report, but the build report is for the modified package, not for the package that is actually in the release repos. HTH, H.
The solution I came up with was to add new objects with different names to the data package, and change my examples in the devel version to use the new names. You can delete the old objects after the next release cycle. Stephanie On 7/10/13 7:05 AM, Kasper Daniel Hansen wrote:I have just changed the class definition for a core class in bsseq. A supporting experiment data package, bsseqData, contains two objects of this core class and now it needs to be updated (specifically because the example() contains a command which prints the object and this printing now fails). I can update the bsseqData package, but do I mess with earlier releases when I do this? I am uncertain because the /data is stored in another repository. How should I handle this? Best, Kasper [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel_______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
-- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
