Valerie, Could you please help answer the multicore problem the user experienced with? FYI, I used parLapply to replace lapply when multicore = TRUE. Thanks!
Best regards, Julie From: "alexgraehl [bioc]" <nore...@bioconductor.org<mailto:nore...@bioconductor.org>> Reply-To: "reply+c798347e+c...@bioconductor.org<mailto:reply+c798347e+c...@bioconductor.org>" <reply+c798347e+c...@bioconductor.org<mailto:reply+c798347e+c...@bioconductor.org>> Date: Monday, November 2, 2015 4:21 PM To: Lihua Julie Zhu <julie....@umassmed.edu<mailto:julie....@umassmed.edu>> Subject: [bioc] A: CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for Activity on a post you are following on support.bioconductor.org<https://support.bioconductor.org> User alexgraehl<https://support.bioconductor.org/u/8935/> wrote Answer: CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb<https://support.bioconductor.org/p/72994/#74042>: Also, I have always had to set "multicore = FALSE," or I always get this error: Error in do.call(rbind, lapply(1:length(subjects), function(p) { : error in evaluating the argument 'args' in selecting a method for function 'do.call': Error in socketConnection("localhost", port = port, server = TRUE, blocking = TRUE, : all connections are in use Not sure if that's a problem with my setup (R 3.2.2 on RedHat Enterprise Linux 6.5, I think), or what, but the easy workaround is to just set multicore=FALSE. ________________________________ Post tags: crisprseek, sgrna, crispr, cas9, R You may reply via email or visit https://support.bioconductor.org/p/72994/#74042 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
