For what it's worth and from an earlier comment in this thread, one way to use
git (for Johanne's benefit) within the context of svn (for Florian's benefit)
is to svn co Gviz, then on top of svn create a new git repository branch and
update at will, then merge changes to master and provide florian with svn diff.
Something like
svn co https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Gviz
cd Gviz/
git init
git add .
git commit -a -m "initial commit"
git checkout -b my_mods
## amazing changes
git commit -a -m "my amazing changes"
git checkout master
svn st # no changes
git merge my_mods
svn st # my amazing changes
svn diff > Gviz.diff # ... as a diff for Florian
________________________________________
From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Rainer
Johannes [johannes.rai...@eurac.edu]
Sent: Monday, November 09, 2015 10:08 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Gviz: implementing support for FaFiles from
AnnotationHub
Dear All, dear Florian,
I’m currently working on a Gviz-hack that would enable to use the FaFiles
provided from AnnotationHub directly as SequenceTracks in Gviz. I think that
might be a nice addition, since that way both Ensembl based annotations (e.g.
as EnsDbs) and Ensembl genome fasta files (provided by AnnotationHub) could be
used.
So, Florian, eventually I’m going to send you some more files.
cheers, jo
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