thanks Martin, I will consider that… although I did already lots of changes, so I have to figure out how to do that. Actually, I start appreciating the "pull request” approach from github… working simultaneously with git and svn can be quite tricky.
cheers, jo > On 09 Nov 2015, at 17:15, Morgan, Martin <martin.mor...@roswellpark.org> > wrote: > > For what it's worth and from an earlier comment in this thread, one way to > use git (for Johanne's benefit) within the context of svn (for Florian's > benefit) is to svn co Gviz, then on top of svn create a new git repository > branch and update at will, then merge changes to master and provide florian > with svn diff. Something like > > svn co https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Gviz > cd Gviz/ > git init > git add . > git commit -a -m "initial commit" > git checkout -b my_mods > ## amazing changes > git commit -a -m "my amazing changes" > git checkout master > svn st # no changes > git merge my_mods > svn st # my amazing changes > svn diff > Gviz.diff # ... as a diff for Florian > > ________________________________________ > From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Rainer > Johannes [johannes.rai...@eurac.edu] > Sent: Monday, November 09, 2015 10:08 AM > To: bioc-devel@r-project.org > Subject: [Bioc-devel] Gviz: implementing support for FaFiles from > AnnotationHub > > Dear All, dear Florian, > > I’m currently working on a Gviz-hack that would enable to use the FaFiles > provided from AnnotationHub directly as SequenceTracks in Gviz. I think that > might be a nice addition, since that way both Ensembl based annotations (e.g. > as EnsDbs) and Ensembl genome fasta files (provided by AnnotationHub) could > be used. > > So, Florian, eventually I’m going to send you some more files. > > cheers, jo > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
