... or simply incorporate the code (with proper attribution, as stipulated by
its license)
:-)
B.
On Feb 25, 2016, at 11:55 PM, Dan Tenenbaum <dtene...@fredhutch.org> wrote:
> You cannot. All dependencies of Bioconductor packages must be available in
> CRAN or Bioconductor.
>
> You could ask the maintainer of that package to submit it to CRAN or
> Bioconductor.
>
> Alternatively you could minimize the dependence on it so that code that
> depends on it is only run if
>
> require("cellomics") evaluates to TRUE. You would put
> Enhances: cellomics
> in your DESCRIPTION file if you choose to do this. It would be up to end
> users of the package to install the cellomics package themselves but you can
> describe how to do this in your documentation. If you do this, your essential
> functionality (vignettes, tests, man pages) needs to work without access to
> the cellomics package. Note that the Bioconductor build system will not
> install the cellomics package.
>
> Or simply don't use the package at all.
>
> Dan
>
>
> ----- Original Message -----
>> From: "Diana LOW" <d...@imcb.a-star.edu.sg>
>> To: "bioc-devel" <bioc-devel@r-project.org>
>> Sent: Thursday, February 25, 2016 8:45:34 PM
>> Subject: [Bioc-devel] Using non-CRAN/Bioc package
>
>> Hi,
>>
>> I am trying to use a non-CRAN/Bioc (https://gitlab.com/al22/r-cellomics) in
>> my
>> package.
>>
>> This has failed the BUILD check upon submission because the package is not
>> available.
>>
>> Any suggestion on how I can do this?
>>
>> Thanks!
>>
>> Regards,
>>
>> Diana Low, Ph.D.
>> Senior Research Fellow, EG Lab
>> Institute of Molecular and Cell Biology (IMCB)
>> 61 Biopolis Drive
>> Proteos #03-06
>> Singapore 138673
>>
>> d...@imcb.a-star.edu.sg
>> http://www.eglab.org/
>>
>>
>>
>> Note: This message may contain confidential information. If this Email/Fax
>> has
>> been sent to you by mistake, please notify the sender and delete it
>> immediately. Thank you.
>>
>> [[alternative HTML version deleted]]
>>
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