----- Original Message ----- > From: "Dan Tenenbaum" <dtene...@fredhutch.org> > To: "Lara Urban" <lara.h.ur...@ebi.ac.uk> > Cc: "bioc-devel" <bioc-devel@r-project.org> > Sent: Monday, April 11, 2016 9:29:30 AM > Subject: Re: [Bioc-devel] package submission - problem with vignette
> It means that when you run R CMD build YourPackageName, the vignette is not > built. > > It simply looks in the output of R CMD build for a line that starts: > > * creating vignettes ... > > If this line is present, it means `R` has not detected that a vignette > needs to be built. Oops, that should say: "If this line is NOT present..." Dan > > It's `REQUIRED` that the vignette be built. > > If you have vignette sources yet still get this message, there could > be several causes: > > * Missing or invalid `VignetteBuilder` line in the `DESCRIPTION` file. > * Missing or invalid `VignetteEngine` line in the vignette source. > > See `knitr`'s [package vignette](http://yihui.name/knitr/demo/vignette/) > page, or the > [Non-Sweave > vignettes](https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Non_002dSweave-vignettes) > section of "Writing R Extensions" for more information. > > Dan > > > ----- Original Message ----- >> From: "Lara Urban" <lara.h.ur...@ebi.ac.uk> >> To: "bioc-devel" <bioc-devel@r-project.org> >> Sent: Monday, April 11, 2016 8:58:14 AM >> Subject: [Bioc-devel] package submission - problem with vignette > >> Dear BiocDevel, >> >> I have a question regarding the submission of my package; thank you very >> much in advance. >> >> I have submitted my package to Bioconductor a few days ago and it passed >> build, check and bioccheck. Now, that I had to change just one line in my R >> code and submitted it again, I get an error on all three platforms, because >> it is required that my vignette is built by R CMD build; however, I still >> have my Rmd file in the order vignettes as before. Shouldn't it build >> automatically? Do you have any ideas what is going wrong here? >> >> Many thanks and kind regards, >> Lara >> >> >> -- >> Lara Urban >> >> Predoctoral Fellow >> EMBL-European Bioinformatics Institute >> Wellcome Trust Genome Campus >> Hinxton, Cambridge >> CB10 1SD >> United Kingdom >> >> PhD Student >> Wolfson College >> University of Cambridge >> >> phone: + 49 (0) 176 76 37 99 03 <%2B%2044%20%280%29%201223%20494%20655> >> email: lara.h.ur...@ebi.ac.uk <rf...@cam.ac.uk> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
