Dear Dan, Many thanks, apparently I just had to update one of the knitr-associated components.
I hope it will go through now. Many thanks again and enjoy your evening, Lara 2016-04-11 17:39 GMT+01:00 Dan Tenenbaum <dtene...@fredhutch.org>: > > > ----- Original Message ----- > > From: "Dan Tenenbaum" <dtene...@fredhutch.org> > > To: "Lara Urban" <lara.h.ur...@ebi.ac.uk> > > Cc: "bioc-devel" <bioc-devel@r-project.org> > > Sent: Monday, April 11, 2016 9:29:30 AM > > Subject: Re: [Bioc-devel] package submission - problem with vignette > > > It means that when you run R CMD build YourPackageName, the vignette is > not > > built. > > > > It simply looks in the output of R CMD build for a line that starts: > > > > * creating vignettes ... > > > > If this line is present, it means `R` has not detected that a vignette > > needs to be built. > > Oops, that should say: "If this line is NOT present..." > > Dan > > > > > It's `REQUIRED` that the vignette be built. > > > > If you have vignette sources yet still get this message, there could > > be several causes: > > > > * Missing or invalid `VignetteBuilder` line in the `DESCRIPTION` file. > > * Missing or invalid `VignetteEngine` line in the vignette source. > > > > See `knitr`'s [package vignette](http://yihui.name/knitr/demo/vignette/) > > page, or the > > [Non-Sweave > > vignettes]( > https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Non_002dSweave-vignettes > ) > > section of "Writing R Extensions" for more information. > > > > Dan > > > > > > ----- Original Message ----- > >> From: "Lara Urban" <lara.h.ur...@ebi.ac.uk> > >> To: "bioc-devel" <bioc-devel@r-project.org> > >> Sent: Monday, April 11, 2016 8:58:14 AM > >> Subject: [Bioc-devel] package submission - problem with vignette > > > >> Dear BiocDevel, > >> > >> I have a question regarding the submission of my package; thank you very > >> much in advance. > >> > >> I have submitted my package to Bioconductor a few days ago and it passed > >> build, check and bioccheck. Now, that I had to change just one line in > my R > >> code and submitted it again, I get an error on all three platforms, > because > >> it is required that my vignette is built by R CMD build; however, I > still > >> have my Rmd file in the order vignettes as before. Shouldn't it build > >> automatically? Do you have any ideas what is going wrong here? > >> > >> Many thanks and kind regards, > >> Lara > >> > >> > >> -- > >> Lara Urban > >> > >> Predoctoral Fellow > >> EMBL-European Bioinformatics Institute > >> Wellcome Trust Genome Campus > >> Hinxton, Cambridge > >> CB10 1SD > >> United Kingdom > >> > >> PhD Student > >> Wolfson College > >> University of Cambridge > >> > >> phone: + 49 (0) 176 76 37 99 03 > <%2B%2044%20%280%29%201223%20494%20655> > >> email: lara.h.ur...@ebi.ac.uk <rf...@cam.ac.uk> > >> > >> [[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioc-devel@r-project.org mailing list > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- Lara Urban Predoctoral Fellow EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD United Kingdom PhD Student Wolfson College University of Cambridge phone: + 49 (0) 176 76 37 99 03 <%2B%2044%20%280%29%201223%20494%20655> email: lara.h.ur...@ebi.ac.uk <rf...@cam.ac.uk> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
