> sessionInfo()
R version 3.3.0 beta (2016-04-06 r70435)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.3 (El Capitan)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
On Mon, Apr 11, 2016 at 6:07 PM, Dan Tenenbaum <dtene...@fredhutch.org>
wrote:
> Karim, What is the sessionInfo() in your R-3.3? It might be too old to
> have the new feature. It needs to be at svn rev r70426 or newer.
>
> Dan
>
>
> ----- Original Message -----
> > From: "Karim Mezhoud" <kmezh...@gmail.com>
> > To: "Lihua Zhu" <julie....@umassmed.edu>
> > Cc: "Dan Tenenbaum" <dtene...@fredhutch.org>, "Michael Lawrence" <
> lawrence.mich...@gene.com>, "bioc-devel"
> > <bioc-devel@r-project.org>
> > Sent: Monday, April 11, 2016 10:03:52 AM
> > Subject: Re: [Bioc-devel] import except on Window Machine
>
> > Dear Julie,
> > Are you using roxigen2 to edit NAMESPACE file?
> > Are you using R 3.4?
> > Thanks
> >
> > In my case, When I used R 3.3 I get this error:
> >
> >
> > ==> R CMD INSTALL --no-multiarch --with-keep.source bioCancer
> >
> > * installing to library
> > ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library’
> > * installing *source* package ‘bioCancer’ ...
> > ** R
> > ** inst
> > ** preparing package for lazy loading
> > Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck =
> vI[[i]])
> > :
> > there is no package called ‘c("dataTableOutput", "renderDataTable")’
> > ERROR: lazy loading failed for package ‘bioCancer’
> > * removing
> >
> ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/bioCancer’
> > * restoring previous
> >
> ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/bioCancer’
> >
> > Exited with status 1
> >
> > When I used R 3.4, I get :
> >
> > unfortunately,
> >
> > Bioconductor version 3.3 (BiocInstaller 1.21.4), ?biocLite for help
> > Bioconductor does not yet support R version 3.4.0
> >
> >
> >
> > On Mon, Apr 11, 2016 at 5:30 PM, Zhu, Lihua (Julie) <
> julie....@umassmed.edu>
> > wrote:
> >
> >> Thanks, Dan!
> >>
> >> Best,
> >>
> >> Julie
> >>
> >> On 4/11/16 12:22 PM, "Dan Tenenbaum" <dtene...@fredhutch.org> wrote:
> >>
> >> >The windows machine is still running an older version of R that does
> not
> >> >support this NAMESPACE syntax. I will update it this week.
> >> >Dan
> >> >
> >> >
> >> >----- Original Message -----
> >> >> From: "Lihua Zhu" <julie....@umassmed.edu>
> >> >> To: "bioc-devel" <bioc-devel@r-project.org>
> >> >> Cc: "Michael Lawrence" <lawrence.mich...@gene.com>
> >> >> Sent: Monday, April 11, 2016 9:18:31 AM
> >> >> Subject: [Bioc-devel] import except on Window Machine
> >> >
> >> >> Michael,
> >> >>
> >> >> For some reason, adding except clause in import in the NAMESPACE
> file
> >> >>gives
> >> >> error on window server, although it runs fine on Linux and Mac OS X.
> >> >>
> >> >>
> >>
> https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_chec
> >>
> >>kResults_devel_bioc-2DLATEST_CRISPRseek_moscato2-2Dbuildsrc.html&d=BQICaQ
> >>
> >>&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPH
> >>
> >>hwHHF5gJMlij5cC5bLU&m=t9rR8WHE_O0PrI0B-0ySt37UGJMdDhnwk0JFoVzS5Cw&s=lEJWy
> >> >>zN3zY_O2V1X3QmOZcPD25KidcjhIQMAky52xsA&e=
> >> >>
> >> >> Here is the line that gives error.
> >> >> import(S4Vectors, except=c(fold, values))
> >> >>
> >> >> Did I miss something? Thank!
> >> >>
> >> >> Best regards,
> >> >>
> >> >> Julie
> >> >>
> >> >>
> >> >>
> >> >> [[alternative HTML version deleted]]
> >> >>
> >> >> _______________________________________________
> >> >> Bioc-devel@r-project.org mailing list
> >> >>
> >> >>
> >>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman
> >>
> >>_listinfo_bioc-2Ddevel&d=BQICaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPl
> >>
> >>OmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=t9rR8WHE_O0PrI0B-0yS
> >>
> >>t37UGJMdDhnwk0JFoVzS5Cw&s=3ZMFBJ4XMwlGXkfXcB5spcBnnzqBDeqk05sf_TSi88g&e=
> >>
> >> _______________________________________________
> >> Bioc-devel@r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
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