Dear Karim, I edit NAMESPACE manually and here is my R sessionInfo.
R Under development (unstable) (2016-04-03 r70416) Platform: x86_64-apple-darwin12.5.0 (64-bit) Running under: OS X 10.8.5 (Mountain Lion) Best regards, Julie From: Karim Mezhoud <kmezh...@gmail.com<mailto:kmezh...@gmail.com>> Date: Monday, April 11, 2016 1:03 PM To: Lihua Julie Zhu <julie....@umassmed.edu<mailto:julie....@umassmed.edu>> Cc: Dan Tenenbaum <dtene...@fredhutch.org<mailto:dtene...@fredhutch.org>>, Michael Lawrence <lawrence.mich...@gene.com<mailto:lawrence.mich...@gene.com>>, "bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>" <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] import except on Window Machine Dear Julie, Are you using roxigen2 to edit NAMESPACE file? Are you using R 3.4? Thanks In my case, When I used R 3.3 I get this error: ==> R CMD INSTALL --no-multiarch --with-keep.source bioCancer * installing to library �/Library/Frameworks/R.framework/Versions/3.3/Resources/library� * installing *source* package �bioCancer� ... ** R ** inst ** preparing package for lazy loading Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called �c("dataTableOutput", "renderDataTable")� ERROR: lazy loading failed for package �bioCancer� * removing �/Library/Frameworks/R.framework/Versions/3.3/Resources/library/bioCancer� * restoring previous �/Library/Frameworks/R.framework/Versions/3.3/Resources/library/bioCancer� Exited with status 1 When I used R 3.4, I get : unfortunately, Bioconductor version 3.3 (BiocInstaller 1.21.4), ?biocLite for help Bioconductor does not yet support R version 3.4.0 On Mon, Apr 11, 2016 at 5:30 PM, Zhu, Lihua (Julie) <julie....@umassmed.edu<mailto:julie....@umassmed.edu>> wrote: Thanks, Dan! Best, Julie On 4/11/16 12:22 PM, "Dan Tenenbaum" <dtene...@fredhutch.org<mailto:dtene...@fredhutch.org>> wrote: >The windows machine is still running an older version of R that does not >support this NAMESPACE syntax. I will update it this week. >Dan > > >----- Original Message ----- >> From: "Lihua Zhu" <julie....@umassmed.edu<mailto:julie....@umassmed.edu>> >> To: "bioc-devel" <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> >> Cc: "Michael Lawrence" >> <lawrence.mich...@gene.com<mailto:lawrence.mich...@gene.com>> >> Sent: Monday, April 11, 2016 9:18:31 AM >> Subject: [Bioc-devel] import except on Window Machine > >> Michael, >> >> For some reason, adding except clause in import in the NAMESPACE file >>gives >> error on window server, although it runs fine on Linux and Mac OS X. >> >>https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_chec >>kResults_devel_bioc-2DLATEST_CRISPRseek_moscato2-2Dbuildsrc.html&d=BQICaQ >>&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPH >>hwHHF5gJMlij5cC5bLU&m=t9rR8WHE_O0PrI0B-0ySt37UGJMdDhnwk0JFoVzS5Cw&s=lEJWy >>zN3zY_O2V1X3QmOZcPD25KidcjhIQMAky52xsA&e= >> >> Here is the line that gives error. >> import(S4Vectors, except=c(fold, values)) >> >> Did I miss something? Thank! >> >> Best regards, >> >> Julie >> >> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list >> >>https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman >>_listinfo_bioc-2Ddevel&d=BQICaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPl >>OmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=t9rR8WHE_O0PrI0B-0yS >>t37UGJMdDhnwk0JFoVzS5Cw&s=3ZMFBJ4XMwlGXkfXcB5spcBnnzqBDeqk05sf_TSi88g&e= _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel<https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=BQMFaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=AB7nykTvIT2iR1Wt2hqE-ffgtXkKWIuCMsFXWvGVfoQ&s=IAVDs-cP84aYv-jo_W536gJSurqCKzRaASifblHjFr8&e=> [[alternative HTML version deleted]]
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