Sorry, can you try one more time? Thanks, Martin
On 10/20/2016 06:06 AM, Rodriguez Martinez, Andrea wrote:
Thanks for your reply.
I have successfully removed BiocInstaller by hand, restart R, and then,
installed with:
source("https://bioconductor.org/biocLite.R";)
Warning in install.packages :
URL
'https://bioconductor.org/packages/3.4/bioc/bin/macosx/mavericks/contrib/3.4/PACKAGES.gz':
status was '404 Not Found'
Warning in install.packages :
URL
'https://bioconductor.org/packages/3.4/bioc/bin/macosx/mavericks/contrib/3.4/PACKAGES':
status was '404 Not Found'
Warning in install.packages :
unable to access index for repository
https://bioconductor.org/packages/3.4/bioc/bin/macosx/mavericks/contrib/3.4:
cannot download all files
installing the source package ‘BiocInstaller’
trying URL
'https://bioconductor.org/packages/3.4/bioc/src/contrib/BiocInstaller_1.24.0.tar.gz'
Content type 'application/x-gzip' length 17756 bytes (17 KB)
==================================================
downloaded 17 KB
* installing *source* package ‘BiocInstaller’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
Warning: Bioconductor version 3.4 is too old for R version 3.4.0; see
https://bioconductor.org/install/#troubleshoot-biocinstaller
* DONE (BiocInstaller)
The downloaded source packages are in
‘/private/var/folders/z8/8jwlrtqx3270h05ncg1xwzs80000gn/T/RtmpRmVsc5/downloaded_packages’
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
BiocInstaller::useDevel()
Error: 'devel' version requires a more recent R
Thanks very much,
Andrea
------------------------------------------------------------------------
*From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of
Martin Morgan <martin.mor...@roswellpark.org>
*Sent:* 20 October 2016 10:28:34
*To:* Michael Lawrence; bioc-devel@r-project.org
*Subject:* Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error:
'devel' version requires a more recent R
On 10/20/2016 12:00 AM, Michael Lawrence wrote:
---------- Forwarded message ----------
From: Rodriguez Martinez, Andrea <andrea.rodriguez-martine...@imperial.ac.uk>
Date: Wed, Oct 19, 2016 at 3:33 PM
Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel'
version requires a more recent R
To: Michael Lawrence <lawrence.mich...@gene.com>
Sorry again,
I have just installed the R-devel version and now I get the following
error: "Bioconductor does not yet support R version 3.4.0"
Thank you, you installed BiocInstaller in R-devel (R-3.4) before
Bioconductor officially supported R-3.4, and need to manually remove and
re-install BiocInstaller.
I have updated the online configure, so in a new session, try to load
the BiocInstaller package and you should now see
Bioconductor version 3.4 is too old for R version 3.4.0; see
https://bioconductor.org/install/#troubleshoot-biocinstaller
The instructions are to remove BiocInstaller by hand
remove.packages("BiocInstaller")
remove.packages("BiocInstaller") # fails, if not then investigate
and install again
source("https://bioconductor.org/biocLite.R";)
Martin
Thanks,
Andrea
________________________________
From: Rodriguez Martinez, Andrea
Sent: 19 October 2016 23:13:06
To: Michael Lawrence
Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel'
version requires a more recent R
Thanks!
________________________________
From: Michael Lawrence <lawrence.mich...@gene.com>
Sent: 19 October 2016 23:02:17
To: Rodriguez Martinez, Andrea
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel'
version requires a more recent R
Bioconductor 3.5 requires R-devel.
On Wed, Oct 19, 2016 at 2:57 PM, Rodriguez Martinez, Andrea
<andrea.rodriguez-martine...@imperial.ac.uk> wrote:
Hi,
I was just trying to use the devel branch, but I get this error message (using
R.3.3.1)
BiocInstaller::useDevel()
Error: 'devel' version requires a more recent R
Any help with this?
Thanks very much in advance,
Andrea
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