Hi all, First of all, thanks for the question and answers, it helped me a lot on my local machine.
While we're on the topic, does anyone know when R-devel (R-3.4) will be available on Travis CI ? Because it is running R-3.3.1, and therefore produces the same error message when I instruct Travis to install packages from the devel branch. I suppose this is something that I need to post on the Travis GitHub isse tracker, right, considering the following message? R for Travis-CI is not officially supported, but is community maintained. Please file any issues at https://github.com/travis-ci/travis-ci/issues and mention @craigcitro, @hadley and @jimhester in the issue Best, Kevin On Thu, Oct 20, 2016 at 11:06 AM, Rodriguez Martinez, Andrea < andrea.rodriguez-martine...@imperial.ac.uk> wrote: > Thanks for your reply. > > > I have successfully removed BiocInstaller by hand, restart R, and then, > installed with: > > > > source("https://bioconductor.org/biocLite.R") > Warning in install.packages : > URL 'https://bioconductor.org/packages/3.4/bioc/bin/macosx/ > mavericks/contrib/3.4/PACKAGES.gz': status was '404 Not Found' > Warning in install.packages : > URL 'https://bioconductor.org/packages/3.4/bioc/bin/macosx/ > mavericks/contrib/3.4/PACKAGES': status was '404 Not Found' > Warning in install.packages : > unable to access index for repository https://bioconductor.org/ > packages/3.4/bioc/bin/macosx/mavericks/contrib/3.4: > cannot download all files > installing the source package ‘BiocInstaller’ > > trying URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/ > BiocInstaller_1.24.0.tar.gz' > Content type 'application/x-gzip' length 17756 bytes (17 KB) > ================================================== > downloaded 17 KB > > * installing *source* package ‘BiocInstaller’ ... > ** R > ** inst > ** preparing package for lazy loading > ** help > *** installing help indices > ** building package indices > ** testing if installed package can be loaded > Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help > Warning: Bioconductor version 3.4 is too old for R version 3.4.0; see > https://bioconductor.org/install/#troubleshoot-biocinstaller > * DONE (BiocInstaller) > > The downloaded source packages are in > ‘/private/var/folders/z8/8jwlrtqx3270h05ncg1xwzs80000gn > /T/RtmpRmVsc5/downloaded_packages’ > Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help > > > BiocInstaller::useDevel() > Error: 'devel' version requires a more recent R > > > Thanks very much, > > Andrea > > > > ________________________________ > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Martin > Morgan <martin.mor...@roswellpark.org> > Sent: 20 October 2016 10:28:34 > To: Michael Lawrence; bioc-devel@r-project.org > Subject: Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' > version requires a more recent R > > On 10/20/2016 12:00 AM, Michael Lawrence wrote: > > ---------- Forwarded message ---------- > > From: Rodriguez Martinez, Andrea <andrea.rodriguez-martinez13@ > imperial.ac.uk> > > Date: Wed, Oct 19, 2016 at 3:33 PM > > Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel' > > version requires a more recent R > > To: Michael Lawrence <lawrence.mich...@gene.com> > > > > > > Sorry again, > > > > I have just installed the R-devel version and now I get the following > > error: "Bioconductor does not yet support R version 3.4.0" > > Thank you, you installed BiocInstaller in R-devel (R-3.4) before > Bioconductor officially supported R-3.4, and need to manually remove and > re-install BiocInstaller. > > I have updated the online configure, so in a new session, try to load > the BiocInstaller package and you should now see > > Bioconductor version 3.4 is too old for R version 3.4.0; see > https://bioconductor.org/install/#troubleshoot-biocinstaller > > The instructions are to remove BiocInstaller by hand > > remove.packages("BiocInstaller") > remove.packages("BiocInstaller") # fails, if not then investigate > > and install again > > source("https://bioconductor.org/biocLite.R") > > Martin > > > > > Thanks, > > > > Andrea > > > > ________________________________ > > From: Rodriguez Martinez, Andrea > > Sent: 19 October 2016 23:13:06 > > To: Michael Lawrence > > Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel' > > version requires a more recent R > > > > > > Thanks! > > > > ________________________________ > > From: Michael Lawrence <lawrence.mich...@gene.com> > > Sent: 19 October 2016 23:02:17 > > To: Rodriguez Martinez, Andrea > > Cc: bioc-devel@r-project.org > > Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel' > > version requires a more recent R > > > > Bioconductor 3.5 requires R-devel. > > > > On Wed, Oct 19, 2016 at 2:57 PM, Rodriguez Martinez, Andrea > > <andrea.rodriguez-martine...@imperial.ac.uk> wrote: > >> Hi, > >> > >> > >> I was just trying to use the devel branch, but I get this error message > (using R.3.3.1) > >> > >> > >>> BiocInstaller::useDevel() > >> > >>> Error: 'devel' version requires a more recent R > >> > >> > >> Any help with this? > >> > >> Thanks very much in advance, > >> > >> Andrea > >> > >> [[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioc-devel@r-project.org mailing list > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > This email message may contain legally privileged and/or...{{dropped:2}} > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel