Write and access your output to a temporary directory instead using tempdir().
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Aimin Yan
<aimin.at.w...@gmail.com>
Sent: Tuesday, April 4, 2017 1:45:28 PM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Check error on malbec2
In the package I am trying ti submit to bioconductor, I got the following
error for check.
Warning in dir.create(output.file.dir) :
cannot create dir '/home/pkgbuild/OutputEnmap', reason 'Permission denied'
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/pkgbuild/OutputEnmap/enrichmap_GO.xls': No such
file or directory
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: enrichmentmap -> write.table -> file
It seems I do not have permission to create a directory.
Does anyone know how to fix this check error?
Thanks,
Aimin
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