Bioconductor has a release version and a devel version. Releases happen twice a year (The next occurring at the end of October). All new packages accepted will remain in the devel version of Bioconductor until the next schedule release. The package for that time, will only be available on the devel version of Bioconductor. See http://bioconductor.org/developers/how-to/useDevel/ . Upon the next release, it will then be available in both release and devel.
The link you provided is for Bioconductor release 3.5 only: http://bioconductor.org/packages/release/BiocViews.html#___Software The package is included in the devel BiocViews for Bioconductor 3.6: http://bioconductor.org/packages/devel/BiocViews.html#___Software Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Farhad Shokoohi <shoko...@icloud.com> Sent: Tuesday, September 12, 2017 9:01:52 AM To: Leonardo Collado Torres Cc: Bioc-devel Subject: Re: [Bioc-devel] Package DMCHMM is not installed Thanks but that didn�t clarify why users should install the dev version. Why the package is not on the page http://bioconductor.org/packages/release/BiocViews.html#___Software Sorry this is first time I submitted a package to bioconductor and I am not so familiar with instructions. > On Sep 11, 2017, at 11:31 PM, Leonardo Collado Torres <lcoll...@jhu.edu> > wrote: > > It's only available on bioc-devel, not bioc-release. See > http://bioconductor.org/packages/devel/bioc/html/DMCHMM.html and > http://bioconductor.org/developers/how-to/useDevel/ > > On Mon, Sep 11, 2017 at 7:17 PM, Farhad Shokoohi <shoko...@icloud.com> wrote: >> Hello, >> >> I tried to install my package on a machine and it gives the following >> warning which does not make sense. >> >>> source("https://bioconductor.org/biocLite.R";) >> Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help >>> biocLite("DMCHMM") >> BioC_mirror: https://bioconductor.org >> Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30). >> Installing package(s) �DMCHMM� >> Old packages: 'limma' >> Update all/some/none? [a/s/n]: >> n >> Warning message: >> package �DMCHMM� is not available (for R version 3.4.1) >>> >> >> >> ��� >> Farhad Shokoohi >> Assistant Professor >> Department of Mathematics & Statistics >> Concordia University >> S-LB 915-1, J.W. McConnell Building, >> 1455 De Maisonneuve W., >> Montreal, Quebec, Canada, H3G 1M8 >> Office: (514) 848-2424 ext. 4017 >> Fax: (514) 848-2831 >> shoko...@icloud.com >> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
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