Thanks. Everything is clear to me now.
> On Sep 12, 2017, at 9:08 AM, Shepherd, Lori <lori.sheph...@roswellpark.org> > wrote: > > Bioconductor has a release version and a devel version. Releases happen > twice a year (The next occurring at the end of October). All new packages > accepted will remain in the devel version of Bioconductor until the next > schedule release. The package for that time, will only be available on the > devel version of Bioconductor. See > http://bioconductor.org/developers/how-to/useDevel/ > <http://bioconductor.org/developers/how-to/useDevel/> . Upon the next > release, it will then be available in both release and devel. > > The link you provided is for Bioconductor release 3.5 only: > http://bioconductor.org/packages/release/BiocViews.html#___Software > <http://bioconductor.org/packages/release/BiocViews.html#___Software> > > The package is included in the devel BiocViews for Bioconductor 3.6: > http://bioconductor.org/packages/devel/BiocViews.html#___Software > <http://bioconductor.org/packages/devel/BiocViews.html#___Software> > > > > Lori Shepherd > Bioconductor Core Team > Roswell Park Cancer Institute > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Farhad > Shokoohi <shoko...@icloud.com> > Sent: Tuesday, September 12, 2017 9:01:52 AM > To: Leonardo Collado Torres > Cc: Bioc-devel > Subject: Re: [Bioc-devel] Package DMCHMM is not installed > > Thanks but that didn’t clarify why users should install the dev version. > Why the package is not on the page > http://bioconductor.org/packages/release/BiocViews.html#___Software > <http://bioconductor.org/packages/release/BiocViews.html#___Software> > Sorry this is first time I submitted a package to bioconductor and I am not > so familiar with instructions. > > > > On Sep 11, 2017, at 11:31 PM, Leonardo Collado Torres <lcoll...@jhu.edu> > > wrote: > > > > It's only available on bioc-devel, not bioc-release. See > > http://bioconductor.org/packages/devel/bioc/html/DMCHMM.html > > <http://bioconductor.org/packages/devel/bioc/html/DMCHMM.html> and > > http://bioconductor.org/developers/how-to/useDevel/ > > <http://bioconductor.org/developers/how-to/useDevel/> > > > > On Mon, Sep 11, 2017 at 7:17 PM, Farhad Shokoohi <shoko...@icloud.com> > > wrote: > >> Hello, > >> > >> I tried to install my package on a machine and it gives the following > >> warning which does not make sense. > >> > >>> source("https://bioconductor.org/biocLite.R > >>> <https://bioconductor.org/biocLite.R>") > >> Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help > >>> biocLite("DMCHMM") > >> BioC_mirror: https://bioconductor.org <https://bioconductor.org/> > >> Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30). > >> Installing package(s) ‘DMCHMM’ > >> Old packages: 'limma' > >> Update all/some/none? [a/s/n]: > >> n > >> Warning message: > >> package ‘DMCHMM’ is not available (for R version 3.4.1) > >>> > >> > >> > >> ——— > >> Farhad Shokoohi > >> Assistant Professor > >> Department of Mathematics & Statistics > >> Concordia University > >> S-LB 915-1, J.W. McConnell Building, > >> 1455 De Maisonneuve W., > >> Montreal, Quebec, Canada, H3G 1M8 > >> Office: (514) 848-2424 ext. 4017 > >> Fax: (514) 848-2831 > >> shoko...@icloud.com > >> > >> > >> [[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioc-devel@r-project.org mailing list > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > >> <https://stat.ethz.ch/mailman/listinfo/bioc-devel> > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > <https://stat.ethz.ch/mailman/listinfo/bioc-devel> > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
