Hi Gabe & Levi, Here is my current plan:
1 - complete the requirements checklist ( http://www.bioconductor.org/developers/package-submission/) 2 - get feedback the in-house NGS team, and then from the rest of in-house bioinformatics (others who use R more may spot some issues) 3 - set up pull requests release on github for community testing 4 - advertise github repo on bioconductor and biostars forums 5 - compare to other packages 6 - write paper (decide which journal) 7 - have submission of paper + package ready for October deadline. Regarding the sequence of events - do other authors usually release on bioconductor before submission of a paper or at the same time? What would you recommend? Thanks for the help Kenneth On Tue, Apr 3, 2018 at 4:56 PM, Gabe Becker <becker.g...@gene.com> wrote: > Indeed, and to be a bit more explicit about Levi's point, you *can* > publish your package to bioconductor any time after the deadline, it will > simply go to the development repo for ~6 months, which, as he points out, > may not be a bad thing if it's not ready yet. > > On Tue, Apr 3, 2018 at 8:06 AM, Levi Waldron <lwaldron.resea...@gmail.com> > wrote: > >> On Tue, Apr 3, 2018 at 5:32 AM, Kenneth Condon <roonysga...@gmail.com> >> wrote: >> >> > Have I missed the deadline for the latest release? I have created a >> > package, that runs great but there are a number of errors still from R >> CMD >> > check that I am sorting out. >> > >> > This is my first R package so I'm not sure if development is far enough >> > along, although I suspect it might be. >> > >> >> IMHO, when you're not sure a package is mature enough, and especially for >> a >> first package, it's actually better to miss the release deadline and allow >> bioc-devel users test your package for 6 months before entering the >> release >> cycle. Making significant bug fixes and other changes becomes more >> complicated and more of a pain for you and your users once you are in the >> release... >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> > > > -- > Gabriel Becker, Ph.D > Scientist > Bioinformatics and Computational Biology > Genentech Research > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
