Thanks, Lori. The package masking problem went away a few days ago. - Paul
> On Apr 13, 2018, at 10:31 AM, Shepherd, Lori <lori.sheph...@roswellpark.org> > wrote: > > Generally this means that there are multiple locations where the package is > installed - as determined by .libPaths() - > > The single package builder specifies a package specific place to install > packages that are not installed by the daily builder > C:/Users/pkgbuild/packagebuilder/workers/jobs/704/R-libs > > The package that was installled in this directory was masking the version > used by the default location - > > This is an issue on our end and if it occurs you should notify a Bioconductor > team member. > > > > Lori Shepherd > Bioconductor Core Team > Roswell Park Cancer Institute > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Paul Shannon > <paul.thurmond.shan...@gmail.com> > Sent: Tuesday, April 10, 2018 7:25:54 PM > To: bioc-devel > Subject: [Bioc-devel] right version "masked" by wrong version - not sure what > "masked means" > > I am trying to build IGV (a new submission) on windows (tokay2) after linux > and macOS build clean. > > IGV needs its base class package, BrowserViz, at version >= 2.0, whose build > report is OK for install, build, and build bin. BrowserViz 2.0.11 fails > check, probably because now web browser is available on the build machines. > > The IGV build on windows reports an error I have not seen before. Can anyone > help? What does “masked” mean in this context - not of a function, method or > variable, but apparently of the entire package? > > - Paul > > * installing *source* package 'IGV' ... > ** R > ** inst > ** byte-compile and prepare package for lazy loading > Warning: version 2.0.11 of 'BrowserViz' masked by 1.11.0 in > C:/Users/pkgbuild/packagebuilder/workers/jobs/704/R-libs > Error : package 'BrowserViz' 1.11.0 was found, but >= 2.0 is required by 'IGV' > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
