Martin mentioned that he changed the wording in https://github.com/wch/r-source/commit/cbd7ca1b1aedf0405e11ee2440fbde891cba524e , so more recently than your version of R-devel.
Mike On 16 April 2018 at 11:57, Rainer Johannes <johannes.rai...@eurac.edu> wrote: > Thanks Mike, > > I somehow missed the discussion you mentioned. I would really not like to > include the name of the Rd file I want to link to. The *default* way that > works on Linux and macOS should also work on Windows - otherwise what's the > matter of the alias? Interestingly, on my Windows test machine (Windows 7) > I don't get these warnings (R-devel from 2018-01-07 r74091). > > jo > > > On 16 Apr 2018, at 10:49, Mike Smith <grimbo...@gmail.com> wrote: > > > > Hi Johannes, > > > > xcms is certainly not alone with the warning, and it was discussed in > https://stat.ethz.ch/pipermail/bioc-devel/2018-April/013156.html > > > > I think you should be able to get round it by including the name of Rd > file you're linking to e.g. \code{\link[MSnbase:pickpeaks-method]{pickPeaks}} > (I haven't actually tested this though). > > > > Mike > > > > On 16 April 2018 at 09:06, Rainer Johannes <johannes.rai...@eurac.edu> > wrote: > > Dear all, > > > > we're experiencing WARNINGS in xcms on Tokay2 that are all related to > links in Rd files to functions and methods in other packages. > > Example: > > we have \code{\link[MSnbase]{pickPeaks}} in > XCMSnExp-inherited-methods.Rd that links to the method in MSnbase, that > works nicely on Linux and macOS build machines, but on tokay2 we get: > > > > Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmpw7qeJw/R. > INSTALL1e704df56ca9/xcms/man/XCMSnExp-inherited-methods.Rd:59: file link > 'pickPeaks' in package 'MSnbase' does not exist and so has been treated as > a topic > > > > is there any other solution to removing all links to external packages? > > > > thanks, jo > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
