Hi, You seem to be confusing “Github” with Bioconductor’s private git repository. Please note that, git.bioconductor.org<http://git.bioconductor.org> is a Bioconductor hosted privately administered git server. Github, is hosted by the company Github.com<http://Github.com>.
Developers of Bioconductor are supported only for git.bioconductor.org<http://git.bioconductor.org>. I suggest you read, http://bioconductor.org/developers/how-to/git/. You are trying to access Github using Bioconductor’s git application. This is not a service we provide. Best, Nitesh On Mar 4, 2019, at 11:49 AM, Xinan Yang <xya...@uchicago.edu<mailto:xya...@uchicago.edu>> wrote: Nitesh, Thank you for the instruction. Yes, I activated my account at https://git.bioconductor.org/BiocCredentials/. Then, I can see the seq2pathway package under the fold "which package you can access to." But I can only do the following four modifications but not the package: Update Email<https://git.bioconductor.org/BiocCredentials/update_email/> Update GitHub Username<https://git.bioconductor.org/BiocCredentials/update_github_username/> Add SSH Key<https://git.bioconductor.org/BiocCredentials/add_sshkey/> Reset Password<https://git.bioconductor.org/BiocCredentials/password_reset/> When I open another browser and log into github, it looks the same that 'xyang2uchicago doesn’t have any public repositories yet.' What should I do as a next step to push the updated package? Thank you, Holly ________________________________ From: Turaga, Nitesh <nitesh.tur...@roswellpark.org<mailto:nitesh.tur...@roswellpark.org>> Sent: Monday, March 4, 2019 10:26:35 AM To: Xinan Yang Cc: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>; Jennifer Sun Subject: Re: [Bioc-devel] failed to access github, how to push updated package to the Github repository Hi, Firstly, you are not admin on the web app to be able to login with an “admin” account. Please try https://git.bioconductor.org/BiocCredentials/. You have an account under the email, <xya...@uchicago.edu<mailto:xya...@uchicago.edu>>. Please try to log in and activate your account first using that email address. The link to your package is correct from our end. Best, Nitesh On Mar 4, 2019, at 10:34 AM, Xinan Yang <xya...@uchicago.edu<mailto:xya...@uchicago.edu>> wrote: Dear Bioconductor developers, I tried to push an update of the existing package seq2pathway to github. However, I did not see the package under my github account. I also tried the following linkage (https://git.bioconductor.org/BiocCredentials/admin/login/?next=/BiocCredentials/admin/) but ended with an error message: 'Please enter the correct email address and password for a staff account. Note that both fields may be case-sensitive.' Will anyone tell me how to find back / creat the accessory to github in order to update my package? Thank you, Xinan Holly Yang Research Assistant Professor The University of Chicago Section of Hematology/Oncology, Department of Pediatrics, 900 East 57th Street, KCBD Room 5121 Fax: 773/834-1329 Web: home.uchicago.edu/~/xyang2/<http://home.uchicago.edu/~/xyang2/> ________________________________ From: Shepherd, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> Sent: Monday, March 4, 2019 6:46 AM To: Jennifer Sun Cc: Xinan Yang Subject: Re: Fw: failing package seq2pathway You can check the git credentials app https://git.bioconductor.org/BiocCredentials/admin/login/?next=/BiocCredentials/admin/ to see if you have access. If you continue to have trouble or appear to not have access please send an email to the bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> mailing list showing the code you have tried and requesting additional help. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Yuxi Sun <ysu...@uchicago.edu<mailto:ysu...@uchicago.edu>> Sent: Friday, March 1, 2019 5:43:01 PM To: Shepherd, Lori Cc: Xinan Yang Subject: Re: Fw: failing package seq2pathway Dear Shepherd, We have finished debugging locally for seq2pathway. I have looked at the Github help page for pushing the changes. I am confused about how to get access to the Github repository. I assume that I need an account to get access and make changes to the repository. What exactly should I do? Thank you very much. Best regards, Jennifer [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. 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