Dear colleagues,
As noted in my previous message, I have encountered problems with the
new way of displaying sequences/sequence sets that now use a UTF-8
ellipsis character (internally defined as R object 'compact_ellipsis' in
the package) when the output is included in a LaTeX document (which
happens when printing biological sequences via the 'Biostrings' package
inside LaTeX-based Sweave or knitr documents). My question again: Is
there any special measure that I can take to counteract this issue?
(e.g. like loading \usepackage[xxx]{inputenc} in the vignette, setting
an option, or manually refining 'compact_ellipsis') Is there a way that
the users can revert to the old-style dots for such cases?
As a sidenote: this causes the building of my package 'apcluster' to
break on a non-UTF-8 locale
(https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/apcluster-00check.html),
but leads to warnings also in a UTF-8 locale.
Any help is gratefully appreciated, thanks so much in advance!
Best regards,
Ulrich
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