you are not wrong ... thanks for pointing this out https://github.com/Bioconductor/Biostrings/pull/33
On Sat, Mar 7, 2020 at 2:33 PM Shepherd, Lori <lori.sheph...@roswellpark.org> wrote: > I could be wrong but I think there is an open issue and PR already > submitted that might be related. > > Get Outlook for Android <https://aka.ms/ghei36> > > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of > Vincent Carey <st...@channing.harvard.edu> > *Sent:* Saturday, March 7, 2020 12:58:57 PM > *To:* Ulrich Bodenhofer <bodenho...@bioinf.jku.at> > *Cc:* bioc-devel@r-project.org <bioc-devel@r-project.org>; Kurt Hornik < > kurt.hor...@wu.ac.at> > *Subject:* Re: [Bioc-devel] Biostrings: unicode character ("compact > ellipsis") in print()/show() output (2nd attempt, rephrased) > > I have a feeling that the best way to get action here will be to file an > issue > and perhaps a PR at https://github.com/Bioconductor/Biostrings > > On Sat, Mar 7, 2020 at 7:12 AM Ulrich Bodenhofer <bodenho...@bioinf.jku.at > > > wrote: > > > Dear colleagues, > > > > As noted in my previous message, I have encountered problems with the > > new way of displaying sequences/sequence sets that now use a UTF-8 > > ellipsis character (internally defined as R object 'compact_ellipsis' in > > the package) when the output is included in a LaTeX document (which > > happens when printing biological sequences via the 'Biostrings' package > > inside LaTeX-based Sweave or knitr documents). My question again: Is > > there any special measure that I can take to counteract this issue? > > (e.g. like loading \usepackage[xxx]{inputenc} in the vignette, setting > > an option, or manually refining 'compact_ellipsis') Is there a way that > > the users can revert to the old-style dots for such cases? > > > > As a sidenote: this causes the building of my package 'apcluster' to > > break on a non-UTF-8 locale > > ( > > > https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/apcluster-00check.html > ), > > > > but leads to warnings also in a UTF-8 locale. > > > > Any help is gratefully appreciated, thanks so much in advance! > > > > Best regards, > > Ulrich > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > -- > The information in this e-mail is intended only for the ...{{dropped:18}} > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel