Hi Bioc-devel, Similar to the message I just sent about GenomicFeatures and TxDb.Hsapiens.UCSC.hg19.knownGene, I found that TxDb.Hsapiens.UCSC.hg19.knownGene will fail to install on both macOS and Windows with a fresh R 4.0 and BioC 3.11 installation unless GenomeInfoDbData is installed manually before.
At https://github.com/leekgroup/derfinderPlot/runs/618306031?check_suite_focus=true#step:13:1192 you can see how it failed. * installing *source* package 'TxDb.Hsapiens.UCSC.hg19.knownGene' ... 1193** using staged installation 1194** R 1195** inst 1196** byte-compile and prepare package for lazy loading 1197##[error]Error: package or namespace load failed for 'GenomeInfoDb' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): 1198ERROR: lazy loading failed for package 'TxDb.Hsapiens.UCSC.hg19.knownGene' 1199* removing 'D:/a/_temp/Library/TxDb.Hsapiens.UCSC.hg19.knownGene' 1200 there is no package called 'GenomeInfoDbData' 1201##[error]Error: package 'GenomeInfoDb' could not be loaded Immediately afterwards GenomeInfoDbData does get installed https://github.com/leekgroup/derfinderPlot/runs/618306031?check_suite_focus=true#step:13:1203 (tibble gets installed just after GenomeInfoDbData). If you install GenomeInfoDbData prior to attempting to install TxDb.Hsapiens.UCSC.hg19.knownGene you do not get this error as seen in https://github.com/leekgroup/derfinderPlot/actions/runs/87730429 TxDb.Hsapiens.UCSC.hg19.knownGene depends on GenomicFeatures, which then depends on GenomeInfoDb. Maybe GenomicFeatures is the one missing both the imports/depends on GenomeInfoDbData and tibble. These issues with missing dependencies in the DESCRIPTION files likely don't show up on the Bioconductor build machines since these packages are installed already. Best, Leo _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
