Hi Lori, Excellent solution. I will update my profile. Thank you!
(I should have guessed bioc would have a mechanism for this) > On Jun 5, 2020, at 10:16 AM, Shepherd, Lori <lori.sheph...@roswellpark.org> > wrote: > > Paul > > - On the support site, you can edit your profile and put package names as > watchedtags. When a person posts to the support site and tags with the > package name you would then be emailed. This assumes they tag the post > correctly but also an option > > Lori Shepherd > Bioconductor Core Team > Roswell Park Comprehensive Cancer Center > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Paul Shannon > <paul.thurmond.shan...@gmail.com> > Sent: Friday, June 5, 2020 1:12 PM > To: Nystrom, Spencer <snyst...@email.unc.edu> > Cc: bioc-devel@r-project.org <bioc-devel@r-project.org> > Subject: Re: [Bioc-devel] MotifDb missing some PWMs from FlyFactorSurvey > database > > Thanks, Spencer. Sorry I missed the support posting - there’s no automatic > forwarding from there to maintainers. > > I’ll take a look at this later today, then post back to the support list, and > we will get a fix in. > > Thank you for pointing out the problem! > > - Paul > > > On Jun 5, 2020, at 9:46 AM, Nystrom, Spencer <snyst...@email.unc.edu> wrote: > > > > Hi, > > > > I've identified a few missing PWMs from the MotifDb package and would like > > to help get them added. I posted on the support page but have not received > > a response after 10 days, so messaging here instead (link to forum post: > > https://secure-web.cisco.com/1TFAehHIfvF8C-fsHqKF9EZUlEaLQqYsIygNO_BAsoXZwv_Wu3u5B4wJVetP6b2oLhIIOFSZhhOumdKzED0ovgHBPNyPVtPXiHxRm8b66_DTxd3gOar2MNQ5l9qQH4_wqJMMJaxbnBCWUwAGnSDJO91ueABvVc6mU2FAghpGjUfBlWvlYMMhZzzmbgjYqsldl1Ta23cGowoJ3ncf7CeSKr6bKFMch5qHT0BqRq0t6Gi_b7w1KzlscAc0wC3Pxjq5gXX9vMchpSqTrtO3_MRw3Ojfo2wOimSuSsQL0RWe2mKIGnuSE0r8q7XSF0fsyFaH-DmeMbMdAxJok14mifZioaA/https%3A%2F%2Fsupport.bioconductor.org%2Fp%2F131312%2F). > > Full details can be found in the support post, but in summary, there are a > > small number of Drosophila transcription factors which do not have any > > entries in MotifDb, meaning anyone using that database for their motif > > analysis will not identify these factors as potential candidates. A .meme > > format file ("flyFactor_Missing_Motifdb.meme") of these missing motifs > > along with a reproducible script to identify these factors can be found at > > this gist: > > https://secure-web.cisco.com/1Hw4j-u2eWVf5hZXzqLZ4apPGgjUddOX5ixtNdTGwQZ4NPy_KaMZids5AaShi-S2meTRVKS9jM3cf2iEulIctx81-ZyEXDGgnDv79mSzGZG0QjWEwCoKwaCa8Eg2m1zL4AW14psIhbcmvxc36OZX77cPdvVBZBl0WIzqa0g6N2n6c75iPRS0Mi4k86awArVwZ6SMWbd9onXyqHQqqfNpEcQnilZw0UkOntlEVSBQWpNszEdDH6zw1gLuglq1F4JIJwa6onOYuveddTXIVT0r3veLCqhDXiDZIxFN9PmMrUUh9Xqiq2S2uRkK53JqfA-krBLQfCwo4agchyGpfqwWZOA/https%3A%2F%2Fgist.github.com%2Fsnystrom%2Fb7701858bec6bc4ce7758a7582422359. > > I am happy to help curate any additional metadata required to get these > > factors added to the database. > > > > Best, > > -Spencer > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1phkYo14BRVEEfRyDeaWIrA_pTixsBkMhDEtZJJ_lcV4Ev3nOgpobNwVMNGC0rZ2PP6k0_GxcU4pZuXfj6Z7QQPVun1pslCmmsy8p06Qu26qc8oyiqhJjbddn3W2_2Ob0TkyCNLtOmsOod2iPUdW5HOZnOD8E-hbZEtkd686fRcOfBp0Jol1LdMws-yzTnx2tiY_wuC1fknOPQLjJGju7wMdRHS7Gs1hBT2TcDXo-S2HFRYoKlUZ3TdrVjREc1Lkb0Ik_wRG32UHcv2ZJFMDBlzvcGyI7wY1ihTeNfIGgVPAumaUWOyPKVVFnWC990wgBf1-PbTrIFFfwRUZhaHpnQw/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://secure-web.cisco.com/1phkYo14BRVEEfRyDeaWIrA_pTixsBkMhDEtZJJ_lcV4Ev3nOgpobNwVMNGC0rZ2PP6k0_GxcU4pZuXfj6Z7QQPVun1pslCmmsy8p06Qu26qc8oyiqhJjbddn3W2_2Ob0TkyCNLtOmsOod2iPUdW5HOZnOD8E-hbZEtkd686fRcOfBp0Jol1LdMws-yzTnx2tiY_wuC1fknOPQLjJGju7wMdRHS7Gs1hBT2TcDXo-S2HFRYoKlUZ3TdrVjREc1Lkb0Ik_wRG32UHcv2ZJFMDBlzvcGyI7wY1ihTeNfIGgVPAumaUWOyPKVVFnWC990wgBf1-PbTrIFFfwRUZhaHpnQw/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
