Hi,
What is your upstream remote set as?
git remote -v
Please send results. It might just be you are using the wrong SSH key. A good
solution is to try with a new SSH key on your BiocCredentials app.
Best,
Nitesh
Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute
> On Oct 8, 2021, at 10:34 AM, Federico, Anthony, Nicholas <an...@bu.edu> wrote:
>
> So here are my notes for this when pushing changes:
>
> # Sync with bioconductor dev branch
> git fetch --all
> git checkout master
> git merge upstream/master
> git push upstream master
>
> This worked for a while (past 3 years) but then at some point the
> Bioconductor branch on hypeR stopped getting updated. It seems like that last
> time it worked was in May of this year.
>
> https://bioconductor.org/checkResults/release/bioc-LATEST/hypeR/
> Snapshot Date: 2021-10-07 04:50:01 -0400 (Thu, 07 Oct 2021)
> git_url: https://git.bioconductor.org/packages/hypeR
> git_branch: RELEASE_3_13
> git_last_commit: 23b7217
> git_last_commit_date: 2021-05-19 12:41:30 -0400 (Wed, 19 May 2021)
>
> Sorry for the confusion, my understanding of how to merge things upstream may
> just be lacking.
>
> Anthony
>
>> On Oct 6, 2021, at 11:11 AM, Nitesh Turaga <nturaga.b...@gmail.com> wrote:
>>
>> What are you trying exactly?
>>
>> Please send the exact commands.
>>
>> Check - http://bioconductor.org/developers/how-to/git/ and the FAQ
>> http://bioconductor.org/developers/how-to/git/faq/.
>>
>> Best,
>>
>> Nitesh
>>
>>
>>
>>
>> On Wed, Oct 6, 2021, 4:38 AM Federico, Anthony, Nicholas <an...@bu.edu>
>> wrote:
>> Hi,
>>
>> I think I need some help, I somehow lost the ability to update the Bioc
>> branch for hypeR. The GitHub main branch is passing my tests locally but
>> whatever I try never seems to update the BioC servers.
>>
>> Anthony
>>
>>> On Oct 4, 2021, at 7:43 PM, nturaga.b...@gmail.com wrote:
>>>
>>> hypeR Bioconductor Package Notification
>>>
>>> Nitesh Turaga1
>>>
>>> 1Dana Farber Cancer Institute, Boston, MA, USA
>>>
>>> October 04, 2021
>>>
>>> Package: hypeR
>>>
>>> Hi Anthony Federico,
>>>
>>> I am contacting you concerning the hypeR package, on the release and devel
>>> branch of Bioconductor, for which you are listed as the maintainer.
>>>
>>> The latest build/check report shows that your package is failing on one or
>>> more platforms. Please resolve the issues before the next Bioconductor
>>> release for your package’s continued inclusion in Bioconductor.
>>>
>>> https://bioconductor.org/checkResults/release/bioc-LATEST/hypeR/https://bioconductor.org/checkResults/devel/bioc-LATEST/hypeR/
>>>
>>> Please let me know if you have any questions.
>>>
>>> Regards,
>>>
>>> Nitesh
>>>
>>> Bioconductor Core Team
>>> Scientist II
>>> Dana Farber Cancer Institute
>>> Data Science
>>> Boston, MA
>>>
>>
>
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