The release branch has been frozen. http://bioconductor.org/developers/release-schedule/
Best, Nitesh Turaga Scientist II, Department of Data Science, Bioconductor Core Team Member Dana Farber Cancer Institute > On Oct 25, 2021, at 10:28 AM, Federico, Anthony, Nicholas <an...@bu.edu> > wrote: > > Hi Nitesh, > > Any idea why this isn’t working? > > ❯ git push upstream master:RELEASE_3_13 > > Enumerating objects: 7, done. > Counting objects: 100% (7/7), done. > Delta compression using up to 4 threads > Compressing objects: 100% (4/4), done. > Writing objects: 100% (4/4), 383 bytes | 383.00 KiB/s, done. > Total 4 (delta 3), reused 0 (delta 0), pack-reused 0 > > remote: Error: Illegal version bump from '1.8.0' to '2.0.0'. > remote: > remote: Check http://bioconductor.org/developers/how-to/version-numbering/ > remote: for details. > remote: > To git.bioconductor.org:packages/hypeR.git > ! [remote rejected] master -> RELEASE_3_13 (pre-receive hook declined) > error: failed to push some refs to 'git.bioconductor.org:packages/hypeR.git’ > > My understanding was an even “y” in x.y.z version was all that was required > for pushing to release branches. > > Anthony > >> On Oct 13, 2021, at 9:40 AM, Federico, Anthony, Nicholas <an...@bu.edu> >> wrote: >> >> Hi Nitesh, >> >> So it seems my key is ok: >> >> ssh -T g...@git.bioconductor.org returns: >> R W packages/hypeR >> >> Do I need to create a new RELEASE branch on the upstream repository? >> >> I noticed on the hypeR main repo, there is RELEASE_3_9 and RELEASE_3_10 - >> but they stopped ~ 2 years ago. >> >> Anthony >> >>> On Oct 9, 2021, at 10:09 AM, Federico, Anthony, Nicholas <an...@bu.edu> >>> wrote: >>> >>> I’ll try with a new key and let you know if it worked. >>> >>> Anthony >>> >>>> On Oct 9, 2021, at 10:08 AM, Anthony Federico <an...@bu.edu> wrote: >>>> >>>> Here is what I get: >>>> >>>> ❯ git remote -v >>>> origin https://github.com/montilab/hypeR.git (fetch) >>>> origin https://github.com/montilab/hypeR.git (push) >>>> upstream g...@git.bioconductor.org:packages/hypeR.git (fetch) >>>> upstream g...@git.bioconductor.org:packages/hypeR.git (push) >>>> >>>> Anthony >>>> >>>>> On Oct 8, 2021, at 4:45 PM, Nitesh Turaga <nturaga.b...@gmail.com> wrote: >>>>> >>>>> Hi, >>>>> >>>>> What is your upstream remote set as? >>>>> >>>>> git remote -v >>>>> >>>>> Please send results. It might just be you are using the wrong SSH key. A >>>>> good solution is to try with a new SSH key on your BiocCredentials app. >>>>> >>>>> Best, >>>>> >>>>> Nitesh >>>>> >>>>> >>>>> Nitesh Turaga >>>>> Scientist II, Department of Data Science, >>>>> Bioconductor Core Team Member >>>>> Dana Farber Cancer Institute >>>>> >>>>>> On Oct 8, 2021, at 10:34 AM, Federico, Anthony, Nicholas <an...@bu.edu> >>>>>> wrote: >>>>>> >>>>>> So here are my notes for this when pushing changes: >>>>>> >>>>>> # Sync with bioconductor dev branch >>>>>> git fetch --all >>>>>> git checkout master >>>>>> git merge upstream/master >>>>>> git push upstream master >>>>>> >>>>>> This worked for a while (past 3 years) but then at some point the >>>>>> Bioconductor branch on hypeR stopped getting updated. It seems like that >>>>>> last time it worked was in May of this year. >>>>>> >>>>>> https://bioconductor.org/checkResults/release/bioc-LATEST/hypeR/ >>>>>> Snapshot Date: 2021-10-07 04:50:01 -0400 (Thu, 07 Oct 2021) >>>>>> git_url: https://git.bioconductor.org/packages/hypeR >>>>>> git_branch: RELEASE_3_13 >>>>>> git_last_commit: 23b7217 >>>>>> git_last_commit_date: 2021-05-19 12:41:30 -0400 (Wed, 19 May 2021) >>>>>> >>>>>> Sorry for the confusion, my understanding of how to merge things >>>>>> upstream may just be lacking. >>>>>> >>>>>> Anthony >>>>>> >>>>>>> On Oct 6, 2021, at 11:11 AM, Nitesh Turaga <nturaga.b...@gmail.com> >>>>>>> wrote: >>>>>>> >>>>>>> What are you trying exactly? >>>>>>> >>>>>>> Please send the exact commands. >>>>>>> >>>>>>> Check - http://bioconductor.org/developers/how-to/git/ and the FAQ >>>>>>> http://bioconductor.org/developers/how-to/git/faq/. >>>>>>> >>>>>>> Best, >>>>>>> >>>>>>> Nitesh >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Wed, Oct 6, 2021, 4:38 AM Federico, Anthony, Nicholas <an...@bu.edu> >>>>>>> wrote: >>>>>>> Hi, >>>>>>> >>>>>>> I think I need some help, I somehow lost the ability to update the Bioc >>>>>>> branch for hypeR. The GitHub main branch is passing my tests locally >>>>>>> but whatever I try never seems to update the BioC servers. >>>>>>> >>>>>>> Anthony >>>>>>> >>>>>>>> On Oct 4, 2021, at 7:43 PM, nturaga.b...@gmail.com wrote: >>>>>>>> >>>>>>>> hypeR Bioconductor Package Notification >>>>>>>> >>>>>>>> Nitesh Turaga1 >>>>>>>> >>>>>>>> 1Dana Farber Cancer Institute, Boston, MA, USA >>>>>>>> >>>>>>>> October 04, 2021 >>>>>>>> >>>>>>>> Package: hypeR >>>>>>>> >>>>>>>> Hi Anthony Federico, >>>>>>>> >>>>>>>> I am contacting you concerning the hypeR package, on the release and >>>>>>>> devel branch of Bioconductor, for which you are listed as the >>>>>>>> maintainer. >>>>>>>> >>>>>>>> The latest build/check report shows that your package is failing on >>>>>>>> one or more platforms. Please resolve the issues before the next >>>>>>>> Bioconductor release for your package’s continued inclusion in >>>>>>>> Bioconductor. >>>>>>>> >>>>>>>> https://bioconductor.org/checkResults/release/bioc-LATEST/hypeR/https://bioconductor.org/checkResults/devel/bioc-LATEST/hypeR/ >>>>>>>> >>>>>>>> Please let me know if you have any questions. >>>>>>>> >>>>>>>> Regards, >>>>>>>> >>>>>>>> Nitesh >>>>>>>> >>>>>>>> Bioconductor Core Team >>>>>>>> Scientist II >>>>>>>> Dana Farber Cancer Institute >>>>>>>> Data Science >>>>>>>> Boston, MA >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
