On 12/10/2021 14:24, Hervé Pagès wrote:
Probably the build/ folder that doesn't belong to a package source tree.
You removed it today (commit 546e727eb21be2f1da8cd063f431a227345847da)
but that was after the builds started so this will only be reflected on
Wednesday's build report.
I meant on Thursday's build report, sorry.
H.
Best,
H.
On 12/10/2021 06:50, Pooja Gangras wrote:
Hi all,
My package just got accepted and was added to the nightly build on
Friday.
The build report shows error in installation which it did not show
earlier
during package submission ( pkg submission issue here surfaltr · Issue
#2256 · Bioconductor/Contributions (github.com))
This is the current build (Multiple platform build/check report for BioC
3.14 - All results for package surfaltr (bioconductor.org)) error:
** installing vignettes
Warning in file(con, "w") :
cannot open file
'/home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-surfaltr/00new/surfaltr/doc/index.html':
No such file or directory
Error in file(con, "w") : cannot open the connection
ERROR: installing vignettes failed
* removing ‘/home/biocbuild/bbs-3.14-bioc/R/library/surfaltr’
There are several different solutions suggested in this stackoverflow
page
(r - Installing package fails when building vignettes
((..)/doc/index.html
is missing) - Stack Overflow) . I do have ‘inst/doc’ in my .gitignore
file
and was wondering if I need to remove it to fix this build issue or is
there something else I need to fix?
Thank you,
Pooja
P.S. I have tried sending this email a few times using the email address
linked to my package <gangras_po...@lilly.com> but for some reason the
email is not posted to the mailing list and I get a response that says
'The
message's content type was not explicitly allowed'
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Hervé Pagès
Bioconductor Core Team
hpages.on.git...@gmail.com
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